View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9299_low_14 (Length: 397)

Name: NF9299_low_14
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9299_low_14
NF9299_low_14
[»] chr6 (3 HSPs)
chr6 (175-254)||(3109410-3109489)
chr6 (175-254)||(6475803-6475882)
chr6 (175-251)||(29864812-29864888)
[»] chr8 (16 HSPs)
chr8 (175-251)||(41385930-41386006)
chr8 (175-254)||(2113735-2113814)
chr8 (175-254)||(4656023-4656102)
chr8 (175-254)||(7148981-7149060)
chr8 (175-254)||(10795435-10795514)
chr8 (175-251)||(9458457-9458533)
chr8 (175-251)||(40264335-40264411)
chr8 (175-254)||(42275891-42275970)
chr8 (189-259)||(42366845-42366915)
chr8 (175-254)||(39371225-39371305)
chr8 (175-229)||(1605860-1605914)
chr8 (201-251)||(4302197-4302247)
chr8 (175-225)||(43489896-43489946)
chr8 (189-244)||(9209867-9209922)
chr8 (189-251)||(38805998-38806059)
chr8 (175-217)||(43604435-43604477)
[»] chr2 (16 HSPs)
chr2 (175-251)||(36597705-36597781)
chr2 (175-254)||(6288616-6288695)
chr2 (175-254)||(29941836-29941915)
chr2 (175-254)||(36599205-36599284)
chr2 (175-254)||(45547862-45547941)
chr2 (175-259)||(14919816-14919900)
chr2 (189-254)||(35171459-35171524)
chr2 (175-251)||(27979847-27979923)
chr2 (175-251)||(28066377-28066453)
chr2 (189-251)||(42626474-42626536)
chr2 (189-246)||(45497467-45497524)
chr2 (189-246)||(45505209-45505266)
chr2 (175-257)||(2289228-2289310)
chr2 (175-225)||(7487017-7487067)
chr2 (201-244)||(34027863-34027906)
chr2 (326-366)||(36597856-36597896)
[»] scaffold0153 (1 HSPs)
scaffold0153 (175-254)||(33885-33964)
[»] scaffold0016 (1 HSPs)
scaffold0016 (175-254)||(80853-80932)
[»] chr7 (10 HSPs)
chr7 (175-254)||(12252446-12252525)
chr7 (175-254)||(27417708-27417787)
chr7 (175-254)||(43056748-43056827)
chr7 (175-254)||(30111740-30111819)
chr7 (175-254)||(35089157-35089236)
chr7 (175-251)||(152811-152887)
chr7 (189-251)||(42677321-42677383)
chr7 (175-254)||(33475486-33475563)
chr7 (175-220)||(47912584-47912629)
chr7 (175-236)||(34114601-34114662)
[»] chr5 (10 HSPs)
chr5 (175-254)||(10553683-10553762)
chr5 (175-254)||(40411364-40411443)
chr5 (175-254)||(11632746-11632825)
chr5 (175-254)||(13949861-13949940)
chr5 (175-251)||(3603520-3603596)
chr5 (175-254)||(10553499-10553578)
chr5 (209-251)||(39755291-39755333)
chr5 (190-259)||(18677006-18677074)
chr5 (208-251)||(26629605-26629648)
chr5 (189-251)||(10572243-10572305)
[»] chr3 (20 HSPs)
chr3 (175-254)||(2124765-2124844)
chr3 (175-254)||(30589792-30589871)
chr3 (175-254)||(36054070-36054149)
chr3 (175-254)||(46223366-46223445)
chr3 (175-251)||(23697921-23697997)
chr3 (175-251)||(23716376-23716452)
chr3 (175-251)||(23734832-23734908)
chr3 (175-254)||(19551213-19551292)
chr3 (175-254)||(26556814-26556893)
chr3 (175-254)||(38628880-38628959)
chr3 (175-254)||(50899506-50899585)
chr3 (190-254)||(26004924-26004988)
chr3 (179-254)||(24149901-24149976)
chr3 (175-254)||(26292624-26292701)
chr3 (175-251)||(45214144-45214220)
chr3 (175-254)||(23754492-23754571)
chr3 (175-225)||(23360553-23360603)
chr3 (175-225)||(23367393-23367443)
chr3 (175-244)||(34290227-34290296)
chr3 (201-254)||(35731821-35731874)
[»] chr1 (8 HSPs)
chr1 (175-254)||(14389370-14389448)
chr1 (175-254)||(52706335-52706414)
chr1 (177-254)||(26881878-26881955)
chr1 (189-254)||(45535703-45535769)
chr1 (175-225)||(39758859-39758909)
chr1 (175-225)||(39764213-39764263)
chr1 (175-227)||(45319449-45319501)
chr1 (194-244)||(28038414-28038464)
[»] scaffold0237 (1 HSPs)
scaffold0237 (175-251)||(20507-20583)
[»] chr4 (9 HSPs)
chr4 (175-254)||(7820896-7820975)
chr4 (175-254)||(8583061-8583140)
chr4 (176-254)||(42217508-42217586)
chr4 (175-251)||(42315832-42315908)
chr4 (175-251)||(3434887-3434963)
chr4 (191-254)||(44930560-44930623)
chr4 (175-254)||(56398987-56399066)
chr4 (175-257)||(44647666-44647748)
chr4 (175-225)||(7808974-7809024)
[»] scaffold0472 (1 HSPs)
scaffold0472 (189-256)||(1012-1079)
[»] scaffold0202 (1 HSPs)
scaffold0202 (189-244)||(15699-15754)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 3109410 - 3109489
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  3109410 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaattaagattctt 3109489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 6475803 - 6475882
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  6475803 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 6475882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 29864812 - 29864888
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  29864812 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 29864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 41385930 - 41386006
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  41385930 aaaagactttgttggattgtattaattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 41386006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 2113814 - 2113735
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  2113814 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 2113735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 4656102 - 4656023
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  4656102 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 4656023  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 7149060 - 7148981
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  7149060 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 7148981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 10795435 - 10795514
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  10795435 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 10795514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 9458533 - 9458457
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  9458533 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 9458457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 40264335 - 40264411
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  40264335 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 40264411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 42275970 - 42275891
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||    
T  42275970 aaaagactttgttggattgtattgattttgtggaattttaaaagactttttttgaaagactttttacaatcaagattctt 42275891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 42366915 - 42366845
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaatgc 259  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||| |||||||||| ||||||||| ||||    
T  42366915 gattgtatttattttgtgagattttaaaagatattttttaaaagattttttacaatcaagattcttgatgc 42366845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 39371225 - 39371305
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagac-tttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||  |||||| |||||||||| |||||||||    
T  39371225 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttttggaaagacttttttacaatcaagattctt 39371305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 1605860 - 1605914
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaa 229  Q
    |||||||||||   ||||||||| ||||||||||||||||||||||| |||||||    
T  1605860 aaaagactttgcaggattgtattgattttgtgggattttaaaagacaatttttaa 1605914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 4302197 - 4302247
Alignment:
Q  201 tttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||| |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  4302197 tttgttggattttaaaagacttttttcaaatgactttttacaattaagatt 4302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 43489946 - 43489896
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  43489946 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 43489896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 9209922 - 9209867
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaat 244  Q
    |||| |||| ||||||| |||||||||||||| ||||| ||| |||||||||||||    
T  9209922 gattatattgattttgttggattttaaaagacttttttcaaatgactttttacaat 9209867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 38805998 - 38806059
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||| ||| | || ||||||||||||  ||||||||||||||||||||||| ||||||    
T  38805998 gattgtattgattctatgagattttaaaagat-ttttttaaaagactttttacaatcaagatt 38806059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 43604435 - 43604477
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaa 217  Q
    ||||||||||| | ||||||||| |||||||||||||||||||    
T  43604435 aaaagactttgttggattgtattgattttgtgggattttaaaa 43604477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 36597705 - 36597781
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    |||||| ||||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36597705 aaaagattttgatgaattgtattgattttgtgagattttaaaagacattttttaaaagactttttacaattaagatt 36597781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 6288616 - 6288695
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  6288616 aaaagactttgttggattgtattgattttgtgggattttaaaaaactttttttaaaagactttttacaatcaagattctt 6288695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 29941915 - 29941836
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  29941915 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 29941836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 36599205 - 36599284
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    |||||||||| ||||||| |||| ||||| ||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  36599205 aaaagactttaatcgattatattgattttatggtattttaaaagattttttttaaaagactttttacaattaagattctt 36599284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 45547941 - 45547862
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  45547941 aaaagactttgttggattgtattgattttgtgagattttaaaagactttttttgaaagactttttacaatcaagattctt 45547862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 14919816 - 14919900
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaatgc 259  Q
    |||||| |||| | ||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  14919816 aaaagattttgttggattgtattgattttgtgaaattttaaaagacattttttaaaagattttttacaatcaagattcttgatgc 14919900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 35171459 - 35171524
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||    
T  35171459 gattgtattgattttgtgagattttaaaagactttttttaaaagactttttacaatcaaaattctt 35171524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 27979923 - 27979847
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    |||||||||||   ||||||||||||||| ||||| |||||||||| || |||||||||||||||| ||| ||||||    
T  27979923 aaaagactttgtgtgattgtattaattttatgggaatttaaaagactttatttaaaagactttttataatcaagatt 27979847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 28066453 - 28066377
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    |||||||||||   ||||||||||||||| ||||| |||||||||| || |||||||||||||||| ||| ||||||    
T  28066453 aaaagactttgtgtgattgtattaattttatgggaatttaaaagactttatttaaaagactttttataatcaagatt 28066377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 42626474 - 42626536
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||| ||||  | |||||||||||||| |||||| |||||||||||||||||||||||    
T  42626474 gattgtattgatttattaggattttaaaagactttttttgaaagactttttacaattaagatt 42626536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 45497524 - 45497467
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaatta 246  Q
    ||||||||| ||||| || ||||||||||||| || ||||||||||||||||||||||    
T  45497524 gattgtattgattttttgagattttaaaagactttatttaaaagactttttacaatta 45497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 45505266 - 45505209
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaatta 246  Q
    ||||||||| ||||| || ||||||||||||| || ||||||||||||||||||||||    
T  45505266 gattgtattgattttttgagattttaaaagactttatttaaaagactttttacaatta 45505209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 2289310 - 2289228
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaat 257  Q
    |||||||||||   ||||||||| ||||||  |||||||||||||| || || ||| ||||||||||||| |||||| |||||    
T  2289310 aaaagactttgtgtgattgtattgattttgatggattttaaaagactttattgaaaggactttttacaatcaagatttttaat 2289228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 7487017 - 7487067
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  7487017 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 7487067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 34027863 - 34027906
Alignment:
Q  201 tttgtgggattttaaaagacattttttaaaagactttttacaat 244  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||    
T  34027863 tttgttggattttaaaagactttttttaaatgactttttacaat 34027906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 36597856 - 36597896
Alignment:
Q  326 aataaattataagataactatattctacggtatagtattat 366  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  36597856 aataaatttaaagataattatattctacggtatagtattat 36597896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 33885 - 33964
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  33885 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 33964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 80853 - 80932
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  80853 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 80932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 12252446 - 12252525
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  12252446 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 12252525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 27417708 - 27417787
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  27417708 aaaagactttgttagattgtattgattttgtgggattttaaaagactttttttcaaagactttttacaatcaagattctt 27417787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 43056748 - 43056827
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  43056748 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 43056827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 30111819 - 30111740
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||| |||||||||    
T  30111819 aaaagactttgttggattgtattgattttgtgggattttaaaaaactttttttcaaagactttttacaatcaagattctt 30111740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 35089157 - 35089236
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  35089157 aaaagactttgttggattgtattgattttgtgagattttaaaagactttttttgaaagactttttacaatcaagattctt 35089236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 152887 - 152811
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||| ||||||    
T  152887 aaaagactttgttggattgtattgattttgtaggattttaaaagactttttttgaaagactttttacaatcaagatt 152811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 42677321 - 42677383
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||||| ||||    
T  42677321 gattgtattgattttgtggaattttaaaagactttatttaaaagacttttcacaattaggatt 42677383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 33475563 - 33475486
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||  |||||||||||| |||||| ||||||  |||||||| |||||||||    
T  33475563 aaaagactttgttggattgtattgattttgtgaaattttaaaagactttttttgaaagac--tttacaatcaagattctt 33475486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 47912584 - 47912629
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagac 220  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||    
T  47912584 aaaagactttgttggattgtattgattttgtgggattttaaaagac 47912629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 34114601 - 34114662
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactt 236  Q
    |||||||||||   ||||||||| ||||||  |||||||||||||| || ||||||||||||    
T  34114601 aaaagactttgtgtgattgtattgattttgaaggattttaaaagactttgtttaaaagactt 34114662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 10553762 - 10553683
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  10553762 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 10553683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 40411443 - 40411364
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  40411443 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 40411364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 11632746 - 11632825
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||| |||||||||    
T  11632746 aaaagactttgttggattgtattgattttgtgggattttaaaatactttttttgaaagactttttacaatcaagattctt 11632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 13949861 - 13949940
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||    
T  13949861 aaaagactttgttggattgtattgattttgtgggattataaaagactttttttgaaagactttttacaatcaagattctt 13949940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 3603520 - 3603596
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||  |||||| |||||||||||||||| ||||||    
T  3603520 aaaagactttgttggattgtattgattttgtggaattttaaaagattttttttgaaagactttttacaatcaagatt 3603596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 10553499 - 10553578
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| | |  |||| |||||||||||||||| |||||||||    
T  10553499 aaaagactttgttggattgtattgattttgtgggattttaaaaaaaaaattttgaaagactttttacaatcaagattctt 10553578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 39755333 - 39755291
Alignment:
Q  209 attttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  39755333 attttaaaagatattttttaaaagactttttacaattaagatt 39755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 18677006 - 18677074
Alignment:
Q  190 attgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaatgc 259  Q
    |||||| | ||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||| ||||    
T  18677006 attgtagtgattttgtgggattttaaaa-acagtttttaaaagacttcttacaatcaagattcttgatgc 18677074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 26629605 - 26629648
Alignment:
Q  208 gattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||    
T  26629605 gattttaaaagacttgttttaaaagactttttacaatcaagatt 26629648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 10572305 - 10572243
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    |||| |||| ||| |||| ||| ||||||||| ||||||||||||||||||||| | ||||||    
T  10572305 gattctattgattctgtgagatattaaaagactttttttaaaagactttttacactcaagatt 10572243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 2124765 - 2124844
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  2124765 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 2124844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 30589871 - 30589792
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  30589871 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 30589792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 36054070 - 36054149
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  36054070 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttcaaagactttttacaatcaagattctt 36054149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 46223366 - 46223445
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  46223366 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttaaaagattttttacaatcaagattctt 46223445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 23697997 - 23697921
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23697997 aaaagactttgttggattgtattgattttgtgggatttcaaaagactttttttaaaagactttttacaatcaagatt 23697921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 23716452 - 23716376
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23716452 aaaagactttgttggattgtattgattttgtgggatttcaaaagactttttttaaaagactttttacaatcaagatt 23716376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 23734908 - 23734832
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23734908 aaaagactttgttggattgtattgattttgtgggatttcaaaagactttttttaaaagactttttacaatcaagatt 23734832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 19551213 - 19551292
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||  | ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  19551213 aaaagactttattggattgtattgattttgtgggattttaaaagattttttttaaaagactttttacaatcaagattctt 19551292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 26556893 - 26556814
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||| || |||||||||    
T  26556893 aaaagactttgttcgattgtattgattttgtgggattttaaaagactttttttgaaagactttctacgatcaagattctt 26556814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 38628880 - 38628959
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| |  |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  38628880 aaaagactttgttgaattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 38628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 50899506 - 50899585
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||    
T  50899506 aaaagactttgttggattgtattgattttgtcggattttaaaagactttttttgaaagactttttacaatcaagattctt 50899585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 26004924 - 26004988
Alignment:
Q  190 attgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  26004924 attgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 26004988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 24149901 - 24149976
Alignment:
Q  179 gactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||| | |||| |||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  24149901 gactttgttggattatattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagattctt 24149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 26292624 - 26292701
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | |||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||    
T  26292624 aaaagactttgttggattgtatta-ttttgtggaattttaaaagactttttttaaa-gactttttacaatcaagattctt 26292701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 45214144 - 45214220
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    |||||||||||   ||||||||| |||||||| ||||||||||||| || |||||||| ||||||||||| ||||||    
T  45214144 aaaagactttgtgtgattgtattgattttgtgagattttaaaagactttatttaaaaggctttttacaatcaagatt 45214220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 23754571 - 23754492
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||| |||| || ||||||  ||||||||||||||| ||| |||||    
T  23754571 aaaagactttgttggattgtattgattttgtgggatttcaaaatactttttttggaagactttttacaatcaaggttctt 23754492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 23360603 - 23360553
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  23360603 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 23360553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 23367443 - 23367393
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  23367443 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 23367393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 34290227 - 34290296
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaat 244  Q
    |||||||||||   ||||||||| ||||| |||||||||||||||| ||||| ||| || ||||||||||    
T  34290227 aaaagactttgtgtgattgtattgattttatgggattttaaaagacttttttaaaatgattttttacaat 34290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 35731874 - 35731821
Alignment:
Q  201 tttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||| |||||||||||||  |||||| ||||||||||||| || |||||||||    
T  35731874 tttgttggattttaaaagattttttttgaaagactttttacgatcaagattctt 35731821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 14389448 - 14389370
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  14389448 aaaagactttgttggattgtattgattttgtgggattttaaaagac-ttttttaaaagactttttacaatcaagattctt 14389370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 52706414 - 52706335
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||    
T  52706414 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagattttttacaatcaagattctt 52706335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 26881878 - 26881955
Alignment:
Q  177 aagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||| | ||||||||| |||||||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  26881878 aagactttgttggattgtattgattttgtgggattttaaaagattttttttgaaagactttttacaatcaagattctt 26881955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 45535769 - 45535703
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagac-attttttaaaagactttttacaattaagattctt 254  Q
    ||||||||| ||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  45535769 gattgtattgattttgtgggattttaaaagacttttttttgaaagactttttacaatcaagattctt 45535703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 39758909 - 39758859
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  39758909 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 39758859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 39764263 - 39764213
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  39764263 aaaagactttgttggattgtattgattttgtgggattttaaaagacttttt 39764213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 45319501 - 45319449
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttttt 227  Q
    ||||||||||| | ||||||||| |||||| ||||||||||||||| ||||||    
T  45319501 aaaagactttgttggattgtattgattttgcgggattttaaaagacttttttt 45319449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 28038414 - 28038464
Alignment:
Q  194 tattaattttgtgggattttaaaagacattttttaaaagactttttacaat 244  Q
    |||| ||||| | |||||||||||||| ||||||||| |||||||||||||    
T  28038414 tattgattttataggattttaaaagactttttttaaatgactttttacaat 28038464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 20507 - 20583
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  20507 aaaagactttgttggattgtattgattttgtgggattttaaaagactttttttgaaagactttttacaatcaagatt 20583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 7820975 - 7820896
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||    
T  7820975 aaaagactttgttggattgtattgattttgtaggattttaaaagactttttttgaaagactttttacaatcaagattctt 7820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 8583061 - 8583140
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||  |||||| |||||||||||||||| |||||||||    
T  8583061 aaaagactttgttggattgtattgattttgtgggattttaaaagattttttttgaaagactttttacaatcaagattctt 8583140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 42217508 - 42217586
Alignment:
Q  176 aaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    |||||||||| | ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| || |||||||||    
T  42217508 aaagactttgttggattgtattgattttgtgggattttaaaagactttttttaaaatactttttacgatcaagattctt 42217586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 42315908 - 42315832
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||| ||||||    
T  42315908 aaaagactttgttggattgtattgattttgtgggattttaaaacactttttttgaaagactttttacaatcaagatt 42315832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 3434887 - 3434963
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagatt 251  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||  |||||| |||||||||||||||| ||||||    
T  3434887 aaaagactttgttggattgtattgattttgtggaattttaaaagattttttttgaaagactttttacaatcaagatt 3434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 44930623 - 44930560
Alignment:
Q  191 ttgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||| ||||| ||| |||||||||||| |||||| ||||||||| |||||| |||||||||    
T  44930623 ttgtattgattttatggaattttaaaagactttttttgaaagactttctacaatcaagattctt 44930560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 56399066 - 56398987
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattctt 254  Q
    ||||||||||| |  ||| |||| |||||||| |||||| ||| || |||||| |||||||||||||||| |||||||||    
T  56399066 aaaagactttgttgaattttattgattttgtgagatttttaaaaactttttttgaaagactttttacaatcaagattctt 56398987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 44647748 - 44647666
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaat 257  Q
    |||||||||||   |||||| || ||||||||||||||| | |||| || ||| |||||||||||||||| |||||| |||||    
T  44647748 aaaagactttgtgtgattgtgttgattttgtgggattttgatagactttattttaaagactttttacaatcaagatttttaat 44647666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 7809024 - 7808974
Alignment:
Q  175 aaaagactttgatcgattgtattaattttgtgggattttaaaagacatttt 225  Q
    ||||||||||| | ||||||||| ||||||| |||||||||||||| ||||    
T  7809024 aaaagactttgttggattgtattgattttgtaggattttaaaagacttttt 7808974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 1012 - 1079
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaattaagattcttaa 256  Q
    ||||||||| |||||||||||||||||||||| || ||||||| |||||| ||||||| |||| ||||    
T  1012 gattgtattgattttgtgggattttaaaagactttatttaaaaaacttttcacaattaggatttttaa 1079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 15699 - 15754
Alignment:
Q  189 gattgtattaattttgtgggattttaaaagacattttttaaaagactttttacaat 244  Q
    ||||||||| ||||| || ||||||||||||| || |||||||||||||| |||||    
T  15699 gattgtattgattttttgagattttaaaagactttatttaaaagacttttcacaat 15754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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