View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_15 (Length: 381)
Name: NF9299_low_15
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 62 - 314
Target Start/End: Complemental strand, 9480302 - 9480046
Alignment:
| Q |
62 |
tatatcattagagaacaatttacaatcattttactgtctactattaaactggtgattatgtaatgtgattgaaagattttgacataaaagttaatgaacg |
161 |
Q |
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| T |
9480302 |
tatatcattagataacaatttacaatcattttaccttctactgttaagctggtgattgtgtaatgtgattgaaagattttgacataaaagttaatgaacg |
9480203 |
T |
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| Q |
162 |
tcggcattaatgtcaagaaaatgggaagaagaaaacacaaggaggtcaaatcaaatatgtaacaatttatcattgctctcttaattttcttcttgattgg |
261 |
Q |
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| T |
9480202 |
tcggcattaatgtcaagaaaatgggaagaagaaaacacaaggaggtcaaatcaaatatgtaataatttatcattactctcataattttcttcttaattag |
9480103 |
T |
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| Q |
262 |
gaagaaaacacaatttcgatgtcgt----tttgtaggaaatattggaccatatattc |
314 |
Q |
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| T |
9480102 |
gaagaaaacacaatttcgatgtcgtttaatttgtaggcaatattggaccatatattc |
9480046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 9480044 - 9480010
Alignment:
| Q |
335 |
atggcaaggtaaccacctacgacaaataacagtat |
369 |
Q |
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| T |
9480044 |
atggcaaggtaaccacctacgacaaataacagtat |
9480010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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