View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_16 (Length: 356)
Name: NF9299_low_16
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 31504811 - 31504486
Alignment:
| Q |
18 |
catgtgaatgtttggagactgctcactttttgggatataaaatatttgacccttgtttttgattaggtcgtgcttatatacctatgtatcttgcaatgtc |
117 |
Q |
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| T |
31504811 |
catgtgaatgtttggagactgctcactttttgggatataaaatatttgacccttgttttagattaggtcgtgcttatatacctatgtatcttgcaatgtc |
31504712 |
T |
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| Q |
118 |
agaaaaatcagtgggggtgattaaattatctaattatagatcaaattccacagggaaaggataatttaaccttccccactaggtgacaagagttgccatg |
217 |
Q |
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| T |
31504711 |
agaaaaatcagtgggggtgattaaattatctaattatagatcaaattccacagggaaaggataatttaaccttccccactaggtgacaagagtttccatg |
31504612 |
T |
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| Q |
218 |
tacctcttcttcacatgaggaactaattcaaaaactttattatccttttttacattatcaacaagaacatggtaagatgcatgatctttcaccttaatca |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31504611 |
tacct---cttcacatgaggaactaattcaaaaactttattatccttttttacattatcaacaagaacatggtaagatgcatgatctttcaccttaatca |
31504515 |
T |
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| Q |
318 |
tgttcattatgttgctgatctcttctctg |
346 |
Q |
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| T |
31504514 |
tgttcattatgttgctgatctcttctctg |
31504486 |
T |
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