View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_17 (Length: 354)
Name: NF9299_low_17
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 4704005 - 4703678
Alignment:
| Q |
10 |
gcacagagaatgtggttatctttgggtatctgtatgagtagggtcaactatgaatgttaaagtagaaatcacatcgatatactttctaaatcttaataag |
109 |
Q |
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| T |
4704005 |
gcacagagaatgtggttatctttgggtatctgtatgagtagggtcaactatgaatgttaaagtagaaatcacatcaatatactttctaaatcttaataag |
4703906 |
T |
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| Q |
110 |
atcttcagtatacctagttagctgcattttgatattgtaagaagaagnnnnnnn-ctatcagccagcaatggtgcagaaacaaacaagcaccaaaaaccc |
208 |
Q |
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| T |
4703905 |
atcttcagtatacctagttagctgcattttgatattgtaagaagaagaaaaaaaactatcagccagcaatggtgcagaaacaaacaagcaccaaaaaccc |
4703806 |
T |
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| Q |
209 |
accattttccatgattcaacttgatggatgaaccatgcaagtagcgtgtctgatattatcagacagttgtcaccataactcgattgcacgaaatggctat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4703805 |
accattttccatgattcaacttgatggatgaaccatgcaagtagtgtgtctgatattatcagacagttgtcaccataactcgattgcacgaaatggctat |
4703706 |
T |
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| Q |
309 |
ctaagttaagaaagatagtgattgtcat |
336 |
Q |
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| T |
4703705 |
ctaagttaagaaagatagtgatcgtcat |
4703678 |
T |
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