View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_18 (Length: 344)
Name: NF9299_low_18
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 16370162 - 16370480
Alignment:
| Q |
2 |
gttaaaaatctacgtcatcaaaaaactaaaacatcaatgacaattcaaagtcttaggattttaagtgaaaatttagtgtcaaagcgtgtgtgagttttgg |
101 |
Q |
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| T |
16370162 |
gttaaaaatctacgtcatcaagaaactaaaacatcaatgacaattcaaagtcttaaaattttaagtggaaatttggtgtcaaagcgtatgtgagttttgg |
16370261 |
T |
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| Q |
102 |
tctttagctcgttgttactcccaaaagatagattgatatatgaataaaaatgagacattcttacttaaaagtgtgtgagataattcaactctcatttatt |
201 |
Q |
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| T |
16370262 |
tctttagctcgttgttactcccaaaagatagatagatatatgaataaaaatgagatattcttatttgaaagtgtgtgagataattcaactctcatttatt |
16370361 |
T |
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| Q |
202 |
ttaatgcacatgtatgttttcttaatatccgctttagcatctattcctccacataaatttccaatccaaaaataagcataacgtgtatggaaaggaaaaa |
301 |
Q |
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| T |
16370362 |
ttaatgcacatgtatgttttcttagtatccgctttagcatctat---tccacataaatttccaatccaaaaataaacataacgtgtat-----ggaaaaa |
16370453 |
T |
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| Q |
302 |
gataggattgcagaaagttgttctcaa |
328 |
Q |
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| T |
16370454 |
gataggattgcagaaagttgttctcaa |
16370480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 16369850 - 16369954
Alignment:
| Q |
178 |
gagataattcaactctcatttattttaatgcacatg---tatgttttcttaatatccgctttagcatctattcctccacataaatttccaatccaaaaat |
274 |
Q |
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| T |
16369850 |
gagatgattcaactctcatttattttaatgcacatgaaatatattttcttagtatccactttagcatatat---tccacataaatttccaatccaaaaat |
16369946 |
T |
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| Q |
275 |
aagcataa |
282 |
Q |
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| T |
16369947 |
aaacataa |
16369954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 16370644 - 16370794
Alignment:
| Q |
30 |
aaacatcaatgacaattcaaagtcttaggattttaagtgaaaatttagtgtcaaagcgt-gtgtgagttttggtctttagctcgttgttactcccaaaag |
128 |
Q |
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||||||||| | ||||||||| ||||| |||||||||| ||||||| ||||||||| | |||||||||||| | |||| |||||||||||||||||| |
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| T |
16370644 |
aaacatcaacgtcaattcaaaatcttaagattttaagtaaaaatttggtgtcaaagaatcgtgtgagttttgatttttaactcgttgttactcccaaaca |
16370743 |
T |
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| Q |
129 |
atagattgatatatgaataaaaatgagacatt-cttacttaaaagtgtgtgagat |
182 |
Q |
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||| |||| |||||||||||| ||| ||| ||||||| |||| ||||||||| |
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| T |
16370744 |
ata----gatagatgaataaaaataagatattacttacttgaaagcgtgtgagat |
16370794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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