View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_2 (Length: 616)
Name: NF9299_low_2
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 8264943 - 8264348
Alignment:
| Q |
1 |
gtggcagaaaagagaggaagttgacgcaagtcttgtgactgtttgtttgagagatgaattttgtgtggctaatgaaaggtttggtgtttgattttgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264943 |
gtggcagaaaagagaggaagttgacgcaagtcttatgactatttgtttgagagatgaattttgtgtggctaatgaaaggtttggtgtttgattttgtttt |
8264844 |
T |
|
| Q |
101 |
aatggagttttgatgcttcatatgttgaatgcgagagatgagggcctttgagatatgaaaattaatcattactttataaaatgacacaaacctggtgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264843 |
aatggagttttgatgcttcatatgttgaatgcgagagatgagggcctttgagatatgaaaattaatcattactttataaaatgacacaaacctggtgtgc |
8264744 |
T |
|
| Q |
201 |
cggtaaccatcattttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgtgtttgttagagcgttagctcctagcacttctcccacatac |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8264743 |
cggtaaccagcattttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgcgtttgttagagcgttagctcctagcacttctcccacatac |
8264644 |
T |
|
| Q |
301 |
aaaggatttcaaatttgagattccaagaactcaccgatcaaacggagcacatttcctcaagaattgagaaaataaattcgaataaattgttgccaagacg |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8264643 |
aaaggattccaaatttgagattccaagaactcaccgatcaaatggagcacatttcctcaagaattgagaaaataaattcgaataaattgttgccaacacg |
8264544 |
T |
|
| Q |
401 |
gaataaattgtcaatttgtgatggatttccaaatatgaatagggtttctattagatattttgaagtgggtgatttatctcctatcttcaaaatcaacctc |
500 |
Q |
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| T |
8264543 |
gaataagttgtcaatttgtgatggatttccaaatatgaatagggtttctattagatattttgaagtgggtgatttatctcctatcttcaaaatcaacctc |
8264444 |
T |
|
| Q |
501 |
ccatgcaggttctttatgaatccttcgactccctttgatgtatatgtcctcagagatttcgattgtaatctagtaacctttcaaatagggtgaggg |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264443 |
ccatgcaggttctttatgaatccttcgactccctttgatgtatatgtcctcagagatttcgattgtaatctagtaacctttcaaatagggtgaggg |
8264348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38789316 - 38789218
Alignment:
| Q |
1 |
gtggcagaaaagagaggaagttgacgcaagtcttgtgactgtttgtttgagagatgaattttgtgtggctaatgaaaggtttggtgtttgattttgttt |
99 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||| |||| ||||||| |
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| T |
38789316 |
gtggcagaaaagagaggaagtcgacgtaagtcttgtgactgtttgtttgagagatgagttttgcgttgctaatgaaaggtccggtgcttgactttgttt |
38789218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 38789138 - 38789063
Alignment:
| Q |
213 |
ttttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgtgtttgttagagcgttagctcctagcact |
288 |
Q |
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|||| |||||||||| |||||||||||||||| || ||||||| | |||||||||||| || || ||||||||| |
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| T |
38789138 |
ttttgaaaagagtaatgtggcttaatttagaagtgtgcgttcatctgagtttgttagagcatttgcgcctagcact |
38789063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 583
Target Start/End: Original strand, 16574730 - 16574854
Alignment:
| Q |
458 |
ttttgaagtgggtgatttatctcctatcttcaaaatcaacctcccatgcaggttctttatgaatccttcgactccctttgatgtatatgtcctcagagat |
557 |
Q |
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||||| |||||| |||||||||||| |||| ||||||||||||||||| ||| | | | || || |||| | |||| ||| ||||| ||||||||||| |
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| T |
16574730 |
ttttgcagtgggagatttatctcctttcttaaaaatcaacctcccatggaggatatctttgcattcttcaattccc-ttggtgtattcatcctcagagat |
16574828 |
T |
|
| Q |
558 |
ttcgattgtaatctagtaacctttca |
583 |
Q |
| |
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|| ||||| ||| |||| |||||||| |
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| T |
16574829 |
tttgattgaaatttagtcacctttca |
16574854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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