View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9299_low_25 (Length: 301)
Name: NF9299_low_25
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 4914385 - 4914114
Alignment:
| Q |
18 |
ctacaaacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4914385 |
ctacaaacttcacggggcttatagaagtgcttctggttcgaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctca |
4914286 |
T |
|
| Q |
118 |
catgattgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4914285 |
catgattgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgt |
4914186 |
T |
|
| Q |
218 |
tctgaatgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4914185 |
tctgaatgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
4914114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 2949123 - 2949389
Alignment:
| Q |
23 |
aacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctcacatga |
122 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||| | |||||||||||||||| ||||||||| ||||||| ||||||| |||| ||||||||||||| |
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| T |
2949123 |
aacttcatgtggcttacagaagtgcttctggttcgagaatgtctcaataggaacaattttttcatcagccaaatttgcttcgattttctccctcacatga |
2949222 |
T |
|
| Q |
123 |
ttgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgttctga |
222 |
Q |
| |
|
|||||| || || | ||||||||| |||||||||||||||||||| ||| |||||||| | ||||||||| | |||||||| ||||||||| ||| |
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| T |
2949223 |
ttgaaggtctcaacaggagaactattaattggaatgaacttgaacacatatggcaagctgcacattggagcttcgtctgatcctgtgacaagtgttttga |
2949322 |
T |
|
| Q |
223 |
atgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
289 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |
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| T |
2949323 |
atgcatctataaaagctgatggaacatattcaagtatccctttattccacttatcatccaagagaat |
2949389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 3010285 - 3010019
Alignment:
| Q |
23 |
aacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctcacatga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||| |||||||| |||| || ||||||| || |
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| T |
3010285 |
aacttcacggggcttatagaagtgcttctggtttatgaatgtctcgataggtataattttttcttcatccagctttgctttgattttctgcctcacacga |
3010186 |
T |
|
| Q |
123 |
ttgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgttctga |
222 |
Q |
| |
|
|||||| || || | |||||||||||||||||| ||||||||||| |||| ||||||| || ||||||||||| || || | ||||||||| ||| |
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|
| T |
3010185 |
ttgaagatctcaaaaggagaactatgaattggaaggaacttgaacatataaggcaagctggatagtggagcttcatcagaaccagtcacaagtgttttga |
3010086 |
T |
|
| Q |
223 |
atgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
289 |
Q |
| |
|
|||| || ||||||||| ||||||| ||||||| ||||||||||||||||||| ||| |||||||| |
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|
| T |
3010085 |
atgcatctataaaagctaatggaacatattcaagaatcccttgattccacttatcatcaaagagaat |
3010019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 289
Target Start/End: Original strand, 2932507 - 2932736
Alignment:
| Q |
60 |
aatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctcacatgattgaagttcccatgacgagaactatgaattggaatga |
159 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||| |||| |||| ||||||| ||| |||||| ||| || ||||||||| |||||||| || |
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|
| T |
2932507 |
aatgtctcaataggaacaattttttcttcagcaagtttttctttgattttctccctcgcataattgaaattctcaatcggagaactatcaattggaagga |
2932606 |
T |
|
| Q |
160 |
acttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgttctgaatgcttccataaaagctgatggaacgcattcaagtat |
259 |
Q |
| |
|
|||||||| ||| | ||| ||| ||||| ||||| |||| ||| ||||||||| ||||||| || | ||| ||||||||||| |||||||||| |
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|
| T |
2932607 |
acttgaaccaatcaggcaaactggatactgttaattcatttgattctgtcacaagtgttttgaatgcatctacaaaggctgatggaacatattcaagtat |
2932706 |
T |
|
| Q |
260 |
cccttgattccacttattatccaagagaat |
289 |
Q |
| |
|
||||||||||||||||| || ||| ||||| |
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|
| T |
2932707 |
cccttgattccacttatcattcaatagaat |
2932736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 37797972 - 37798243
Alignment:
| Q |
18 |
ctacaaacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctca |
117 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| ||| ||||| | | ||| |||||||| |||| ||||||| |
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|
| T |
37797972 |
ctactaacttcaccaggcttatagaagtgcttctgcttcgtatatgtctcaataggaacaatattttcattaaccaactttgctttgattttgtccctca |
37798071 |
T |
|
| Q |
118 |
catgattgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgt |
217 |
Q |
| |
|
||||||| || ||| || | ||||| | ||| |||| ||||||||||| | | ||| || ||| ||||||| || |||||| |||||||||| |
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| T |
37798072 |
catgattaaacttctcaaatggcgaactttcaatgggaaggaacttgaacatacgagccaaacttgataccggagcttgatcggatcctacaacaagtgt |
37798171 |
T |
|
| Q |
218 |
tctgaatgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
289 |
Q |
| |
|
| |||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
37798172 |
tttgaatgtatccataaaggccgatggaacacattcaagtatcccttggttccatttattatccaagagaat |
37798243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 2923123 - 2923389
Alignment:
| Q |
23 |
aacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctcacatga |
122 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | | ||||||||||||| ||| |||||||| ||| ||||||||| |||| |||||||||| | |
|
|
| T |
2923123 |
aacttcaccaggcttatagaagtgcttctgcttggagtacgtctcaataggaacaatactttcttcaaccaattttgctttgattttgtccctcacataa |
2923222 |
T |
|
| Q |
123 |
ttgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgttctga |
222 |
Q |
| |
|
|| || ||| || |||||| | ||| |||| ||||||||||| | | ||| || ||||||||||| | ||||||| ||||||||| ||| |
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|
| T |
2923223 |
ttaaacttctcaaatgtagaactttcaatgggaaggaacttgaacatactagccaaactagatactggagcttgaactgatcctatgacaagtgttttga |
2923322 |
T |
|
| Q |
223 |
atgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
289 |
Q |
| |
|
|||| || | ||| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
2923323 |
atgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaat |
2923389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 1504594 - 1504334
Alignment:
| Q |
23 |
aacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctcacatga |
122 |
Q |
| |
|
||||||||| |||||| ||||||||||||| || |||||||||||||| | ||||||||||||| |||||||||||| |||| | ||||| ||| |
|
|
| T |
1504594 |
aacttcacgaggcttaaagaagtgcttctgatttgtgaatgtctcaataggtacaattttttcttcatgcagttttgctttgattttattcctcatgtga |
1504495 |
T |
|
| Q |
123 |
ttgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgttctga |
222 |
Q |
| |
|
|||||| || || | ||||||| | |||||||| |||||||||||||| | ||||||| | |||||||||||| ||||||||| | ||||||| ||| |
|
|
| T |
1504494 |
ttgaagctctcaaaaggagaactttcaattggaaggaacttgaacaaattaggcaagctggatgctggagcttcatctgatcctgcgagaagtgttttga |
1504395 |
T |
|
| Q |
223 |
atgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaa |
283 |
Q |
| |
|
|||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1504394 |
atgcatctataaaagctgacggaacatattcaagtatcccttgattccacttattatccaa |
1504334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 28026669 - 28026940
Alignment:
| Q |
18 |
ctacaaacttcacggggcttatagaagtgcttctggttctaaaatgtctcaataggaataattttttcttcagccagttttgctttaatttcctccctca |
117 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| | | ||||||||||||||| ||| ||||| | | ||| |||| |||| |||| ||||||| |
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|
| T |
28026669 |
ctactaacttcaccaggcttatagaagtgcttctgctctttgtatgtctcaataggaacaatattttcattaaccaatttttctttgattttgtccctca |
28026768 |
T |
|
| Q |
118 |
catgattgaagttcccatgacgagaactatgaattggaatgaacttgaacaaataaatcaagctgcttactggagcttcatatgatcctgcaacaagtgt |
217 |
Q |
| |
|
| | ||| || ||| || ||||||| | ||| |||| ||||||||||| | | ||| ||| ||||||||||| || |||||| |||||||||| |
|
|
| T |
28026769 |
cgtaattaaacttctcaaatggagaactttcaatgggaaggaacttgaacatacgagccaaactggatactggagcttgatcagatcctacaacaagtgt |
28026868 |
T |
|
| Q |
218 |
tctgaatgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaat |
289 |
Q |
| |
|
| ||||||| |||||||| ||| |||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
28026869 |
tttgaatgcatccataaaggctattggaacacattcaagtatcccttggttccatttattatccaagagaat |
28026940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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