View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_27 (Length: 290)
Name: NF9299_low_27
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 31837380 - 31837098
Alignment:
| Q |
1 |
cttaacaagtacaagaagtggaagaa---tttacaacaatgtaaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtt |
97 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837380 |
cttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtt |
31837281 |
T |
|
| Q |
98 |
tatcatcgaattaaagtcacccaatgtatatcaggttcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataagga |
197 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31837280 |
tatcatcgaattaaagtcacccaatgtataccaggttcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataagga |
31837181 |
T |
|
| Q |
198 |
gaacttcgtcttctgcgacgtgaagtgcttccattgccaacacaagactctctcagaaattgctcttccttaatttttctctg |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837180 |
gaacttcgtcttctgcgacgtgaagtgcttccattgccaacacaagactctctcagaaattgctcttccttaatttttctctg |
31837098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 31841413 - 31841150
Alignment:
| Q |
1 |
cttaacaagtacaagaagtggaagaa---tttacaacaatgtaaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtt |
97 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841413 |
cttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtt |
31841314 |
T |
|
| Q |
98 |
tatcatcgaattaaagtcacccaatgtatatcaggttcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataagga |
197 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31841313 |
tatcatcgaattaaagtcacccaat----accaggttcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataagga |
31841218 |
T |
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| Q |
198 |
gaacttcgtcttctgcgacgtgaagtgcttccattgccaacacaagactctctcagaaattgctcttcctt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
31841217 |
gaacttcgtcttctgcgacgtgaagtgcttccattg---acacaagactctatcagaaattgctcttcctt |
31841150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 38040897 - 38040751
Alignment:
| Q |
134 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
38040897 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
38040798 |
T |
|
| Q |
234 |
ccaacacaagactctctcagaaattgctcttccttaatttttctctg |
280 |
Q |
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||| |||||| ||||||||| ||| |||||||||||||||| |||| |
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| T |
38040797 |
acaagacaagattctctcagagattcctcttccttaatttttttctg |
38040751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38040995 - 38040895
Alignment:
| Q |
1 |
cttaacaagtacaagaagtggaagaatttacaacaatgtaaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttat |
100 |
Q |
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||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
38040995 |
cttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagc-taattaaaacacagaccaacagagaaagtttat |
38040897 |
T |
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| Q |
101 |
ca |
102 |
Q |
| |
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|| |
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|
| T |
38040896 |
ca |
38040895 |
T |
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