View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_30 (Length: 273)
Name: NF9299_low_30
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 40405469 - 40405736
Alignment:
| Q |
1 |
tttatccacatatggtcacaaagagaatgattgatttttgatatgttatggaagaaagataacaaggttcatatataaaaaataattcaatttatgtgaa |
100 |
Q |
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| T |
40405469 |
tttatccacatatggtcacaaagagaatgattgatttttgatatgttatggaagaaagatagcaaggttcatatataaaaaataattcaatttatgtgaa |
40405568 |
T |
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| Q |
101 |
ttggaacttgaagaacatgtaagtatatatgtatgatttcaatagcttatagaaaattaattattga-------atgaaagtacttacgaagagcatcac |
193 |
Q |
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| T |
40405569 |
ttggaacttgaagaacatgtaagtatatatgtatgatttcaatagcttatagaaaattaattattgaatgaaagatgaaagtacttacgaagagcatcac |
40405668 |
T |
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| Q |
194 |
ctatcttgaaattcttatcagcaacccatgtttctagattagagctaatgtcccagccagaattatct |
261 |
Q |
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| T |
40405669 |
ctatcttgaaattcttatcagcaacccatgtttctagattagagctaatgtcccagccagagttatct |
40405736 |
T |
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