View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_34 (Length: 247)
Name: NF9299_low_34
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 42074158 - 42073935
Alignment:
| Q |
17 |
agaaatattatattttgtaccagtggaatcaaatgtgctagaagtgatgaggggaaactttttggcctcataaaaattattccaataggaaataggaatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42074158 |
agaaatattatattttgtaccagtggaatcaaatgtgctagaagtgatgaggggaaactttttggcctcataaaaattattccaataggaaataggaatc |
42074059 |
T |
|
| Q |
117 |
acaacatagataaacaacacaaatccaaccaagatgttgacaatggcaaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttccaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42074058 |
acaacatagataaacaacacaaatccaaccaagatgttgacaatggcaaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttccaat |
42073959 |
T |
|
| Q |
217 |
caagtgtaaatgcaccaacaccaa |
240 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42073958 |
caagtgtaaatgcaccaacaccaa |
42073935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 42082682 - 42082459
Alignment:
| Q |
17 |
agaaatattatattttgtaccagtggaatcaaatgtgctagaagtgatgaggggaaactttttggcctcataaaaattattccaataggaaataggaatc |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42082682 |
agaaatattatattttgtaccagttgaatcaaatgtgtttgaagtgatgaagggaaactttttggcctcataaaaattattccaataggaaatgggaatc |
42082583 |
T |
|
| Q |
117 |
acaacatagataaacaacacaaatccaaccaagatgttgacaatggcaaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttccaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| | ||||||||||||||| |
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| T |
42082582 |
acaacatagataaacaacacaaatccaaccaagacgttgatgatggcaaaaccaggataagccaaaggactgtataagaaactaacaacagtgttccaat |
42082483 |
T |
|
| Q |
217 |
caagtgtaaatgcaccaacaccaa |
240 |
Q |
| |
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|||| | ||||||||||| ||||| |
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| T |
42082482 |
caagggcaaatgcaccaataccaa |
42082459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 42058787 - 42058570
Alignment:
| Q |
17 |
agaaatattatattttgtaccagtggaatcaaatgtgctagaagtgatgaggggaaactttttggcctcataaaaattattccaataggaaataggaatc |
116 |
Q |
| |
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||||| ||||||| ||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
42058787 |
agaaacattatatgttgcaccagtggaatcaaatgtgtgagaactgatgaaaggaaactttttggcctcataaaagttgttccaataggaaatgggaatg |
42058688 |
T |
|
| Q |
117 |
acaacatagataaacaacacaaatccaaccaagatgttgacaatggcaaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttccaat |
216 |
Q |
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| T |
42058687 |
ataacatagagaaacaacacaaatccaaccaagacgttaatgatggcaaaaccaggaacagccaaaggacttcctgtgaaactaacaacagtgttccaat |
42058588 |
T |
|
| Q |
217 |
caagtgtaaatgcaccaa |
234 |
Q |
| |
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|||| | ||||||||||| |
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| T |
42058587 |
caagggaaaatgcaccaa |
42058570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 36531187 - 36531344
Alignment:
| Q |
63 |
atgaggggaaactttttggcctcataaaaattattccaataggaaataggaatcacaacatagataaacaacacaaatccaaccaagatgttgacaatgg |
162 |
Q |
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||||| ||||||||||| || ||||| ||||| |||||||| ||||| ||||||| |||||| ||| |||| | ||||||| ||| ||||||| |||| |
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| T |
36531187 |
atgagcggaaacttttttgcatcatacaaattgttccaataagaaattggaatcaaaacatacatatacaagaaaaatccagccattatgttgatgatgg |
36531286 |
T |
|
| Q |
163 |
caaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttccaatcaag |
220 |
Q |
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|||| |||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
36531287 |
caaagccaggaacagccaaaggactacctaagaagccagcaacagtgttccaatcaag |
36531344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 36536771 - 36536950
Alignment:
| Q |
35 |
accagtggaatcaaatgtgctagaagtgatgaggggaaactttttggcctcataaaaattattccaataggaaataggaatcacaacatagataaacaac |
134 |
Q |
| |
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|||||| || ||||||||| |||| | ||||||||||||||||| || ||||| | ||| |||||||| | ||| ||||||| |||||| ||| |||| |
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| T |
36536771 |
accagtagagtcaaatgtgtgagaactaatgaggggaaacttttttgcatcatatacattgttccaataagcaattggaatcaaaacatacatatacaat |
36536870 |
T |
|
| Q |
135 |
acaaatccaaccaagatgttgacaatggcaaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttcca |
214 |
Q |
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||||||||| ||| ||||||| || ||||| ||||| |||||||||||| ||||||| ||||||||||||||||| |
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| T |
36536871 |
acaaatccagccattatgttgatgatagcaaagccaggcacagccaaaggactgcctaagaagccagcaacagtgttcca |
36536950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 36524354 - 36524511
Alignment:
| Q |
63 |
atgaggggaaactttttggcctcataaaaattattccaataggaaataggaatcacaacatagataaacaacacaaatccaaccaagatgttgacaatgg |
162 |
Q |
| |
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||||| |||||||||| || ||||| ||||| |||||||||| ||| || |||| |||||| ||| |||| | ||||||| || ||||||| | || |
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| T |
36524354 |
atgagtggaaacttttgagcatcatataaattgttccaataggcaattggtatcaaaacatacatatacaagaaaaatccagccgttatgttgatgacgg |
36524453 |
T |
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| Q |
163 |
caaaaccaggataagccaaaggactttctaagaaaccagcaacagtgttccaatcaag |
220 |
Q |
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|||| |||||| ||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
36524454 |
caaagccaggaacagccaaaggacttcctaagaagccagcaaccgtgttccaatcaag |
36524511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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