View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_35 (Length: 244)
Name: NF9299_low_35
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 7771918 - 7772156
Alignment:
| Q |
6 |
atggtgtttgaggtagaaggatcaaccatagtagtactcacactattcgtagcatcaacattgacacaaatttcactttggttattgctttcagctgaaa |
105 |
Q |
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| T |
7771918 |
atggtgtttgtggtagaaggatcaaccatagtagtactcacactattagtagcatcaacattgacacaaatttcactttggttattgctttcagctgaaa |
7772017 |
T |
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| Q |
106 |
gatcccttaggttaaaattcttgacatattgatcccacatttcttggttcattgaaggtatagagggattcactacttgaggctgacaagaagaatacat |
205 |
Q |
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| T |
7772018 |
gatccctcaggttaaaattcttgacatattgatcccacatttcttggttcattgaaggtatagagggattcacaacttgaggctgacaagaagaatacat |
7772117 |
T |
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| Q |
206 |
catccattcgtcgacgtctagctgaggaagcctgctgtt |
244 |
Q |
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| T |
7772118 |
catccattcgtcgacgtctagctgaggaagcatgctgtt |
7772156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 7774815 - 7775053
Alignment:
| Q |
6 |
atggtgtttgaggtagaaggatcaaccatagtagtactcacactattcgtagcatcaacattgacacaaatttcactttggttattgctttcagctgaaa |
105 |
Q |
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||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7774815 |
atggtgtttgaagtagaaggatcaaccacagtggtactcacactattactagcatcaacgttgacacaaatttcactttggttattgctttcagctgaaa |
7774914 |
T |
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| Q |
106 |
gatcccttaggttaaaattcttgacatattgatcccacatttcttggttcattgaaggtatagagggattcactacttgaggctgacaagaagaatacat |
205 |
Q |
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| T |
7774915 |
gatccctcaagttaaaattcttgacatattgatcccacacttcttggttcatcgagggtatagagggattcactacttgaggctgacaagaagaatacat |
7775014 |
T |
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| Q |
206 |
catccattcgtcgacgtctagctgaggaagcctgctgtt |
244 |
Q |
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| T |
7775015 |
catccattcatcgacgtctagctgaggaagcatgctgtt |
7775053 |
T |
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