View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_38 (Length: 240)
Name: NF9299_low_38
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 31837360 - 31837564
Alignment:
| Q |
1 |
ccacttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttttaatagtattaatctcctctgnnnnnnnnttaatattaatctctttta |
100 |
Q |
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| T |
31837360 |
ccacttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttgtaatagtattaatctcctctgaaaaaaa-ttaatattaatctctttta |
31837458 |
T |
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| Q |
101 |
taacatgctgctgatatacgcatgtaacatcacttaattttgaacttaaaataaatatatttgcaaacgtagttcacgaagtgatctcacaaatttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837459 |
taacatgctgctgatatacgcatgtaacatcacttaattttgaacttaaaataaatatatttgcaaacgtagttcacgaagtgatctcacaaatttcaca |
31837558 |
T |
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| Q |
201 |
ttagtt |
206 |
Q |
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|||||| |
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| T |
31837559 |
ttagtt |
31837564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31841393 - 31841465
Alignment:
| Q |
1 |
ccacttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttttaatagtattaatctcctctg |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31841393 |
ccacttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttttaataatattaatctcctctg |
31841465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 31841518 - 31841592
Alignment:
| Q |
94 |
tcttttataacatgctgctgatatacgcatgtaacatcacttaattttgaacttaaaataaatatatttgcaaacgta |
171 |
Q |
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| T |
31841518 |
tcttttataacatgctactgata--cgcata-aacatcacttaattttgaacttaatttacatatatttgcaaacgta |
31841592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 38040977 - 38041073
Alignment:
| Q |
3 |
acttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttttaatagtattaatctcctctgnnnnnnnnttaatattaatctctttt |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
38040977 |
acttcttgtacttgttaagttttaatagtattattgctcaaacaaagttttaatagtattaatctcctatgaaaaaaaattaatattaatctctttt |
38041073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 38041126 - 38041191
Alignment:
| Q |
116 |
atacgcatgtaacatcacttaattttgaacttaaaataaatatatttgcaaacgtagttcacgaagt |
182 |
Q |
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|||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
38041126 |
atacgcatataacatcacttaattt-gaacttaaaatacatatgtttgcaaacgtagttcacgaagt |
38041191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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