View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9299_low_39 (Length: 234)
Name: NF9299_low_39
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_39 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1042388 - 1042155
Alignment:
| Q |
1 |
atccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042388 |
atccaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactt |
1042289 |
T |
|
| Q |
101 |
tcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042288 |
tcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
1042189 |
T |
|
| Q |
201 |
ttattacaacaatctcgcgaacttcatatctttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1042188 |
ttattacaacaatctcgcgaacttcatatctttc |
1042155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41193453 - 41193220
Alignment:
| Q |
1 |
atccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
41193453 |
atccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactt |
41193354 |
T |
|
| Q |
101 |
tcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193353 |
tcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
41193254 |
T |
|
| Q |
201 |
ttattacaacaatctcgcgaacttcatatctttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41193253 |
ttattacaacaatctcgcgaacttcatatctttc |
41193220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41200709 - 41200476
Alignment:
| Q |
1 |
atccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
41200709 |
atccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactt |
41200610 |
T |
|
| Q |
101 |
tcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200609 |
tcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
41200510 |
T |
|
| Q |
201 |
ttattacaacaatctcgcgaacttcatatctttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41200509 |
ttattacaacaatctcgcgaacttcatatctttc |
41200476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 41408544 - 41408355
Alignment:
| Q |
24 |
tatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccga |
123 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
41408544 |
tatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcgga |
41408445 |
T |
|
| Q |
124 |
ttcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
213 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41408444 |
ttcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
41408355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 33323979 - 33323746
Alignment:
| Q |
1 |
atccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
33323979 |
atccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacactggtttgactt |
33323880 |
T |
|
| Q |
101 |
tcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323879 |
tcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
33323780 |
T |
|
| Q |
201 |
ttattacaacaatctcgcgaacttcatatctttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33323779 |
ttattacaacaatctcgcgaacttcatatctttc |
33323746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2400 - 2632
Alignment:
| Q |
1 |
atccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactt |
100 |
Q |
| |
|
||||| |||||||| |||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
2400 |
atccacgagaactgttcccaccgtatgaaatcgagacatt-gatgttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtttgactt |
2498 |
T |
|
| Q |
101 |
tcaaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattcta |
200 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
2499 |
tcaaacaaaatatgccccttggattcaacagaaaatgcgcaaagctcacagtttatcggacaggaaaatacattgcaattttgaagagcatcttattgca |
2598 |
T |
|
| Q |
201 |
ttattacaacaatctc-gcgaacttcatatcttt |
233 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |
|
|
| T |
2599 |
ttattacaacaatctcggtgaacttcatatcttt |
2632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 22911 - 23100
Alignment:
| Q |
24 |
tatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccga |
123 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
22911 |
tatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcgga |
23010 |
T |
|
| Q |
124 |
ttcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
213 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23011 |
ttcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
23100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University