View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9299_low_40 (Length: 231)

Name: NF9299_low_40
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9299_low_40
NF9299_low_40
[»] chr7 (2 HSPs)
chr7 (3-98)||(46437506-46437601)
chr7 (3-73)||(39780485-39780552)
[»] chr1 (3 HSPs)
chr1 (3-98)||(18431463-18431558)
chr1 (3-98)||(22788218-22788310)
chr1 (3-66)||(1014321-1014381)
[»] chr2 (2 HSPs)
chr2 (3-98)||(16916196-16916291)
chr2 (3-73)||(4076370-4076437)
[»] chr6 (4 HSPs)
chr6 (3-98)||(5013910-5014005)
chr6 (3-98)||(16693162-16693254)
chr6 (3-73)||(18819511-18819578)
chr6 (3-73)||(24904417-24904484)
[»] chr3 (7 HSPs)
chr3 (3-98)||(26555669-26555761)
chr3 (3-98)||(52118488-52118580)
chr3 (3-73)||(26905749-26905816)
chr3 (3-73)||(36615224-36615291)
chr3 (3-73)||(25069519-25069586)
chr3 (3-73)||(28211468-28211535)
chr3 (20-73)||(2125523-2125573)
[»] chr8 (3 HSPs)
chr8 (3-98)||(28535356-28535448)
chr8 (3-73)||(11463719-11463789)
chr8 (3-73)||(45483642-45483709)
[»] chr4 (2 HSPs)
chr4 (3-73)||(8903451-8903521)
chr4 (5-73)||(45067564-45067632)
[»] chr5 (4 HSPs)
chr5 (3-57)||(424593-424647)
chr5 (4-73)||(17074816-17074885)
chr5 (3-73)||(25634229-25634296)
chr5 (3-57)||(18113588-18113642)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 46437601 - 46437506
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  46437601 aagagagaaaatgatgctgctgattgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgattgtgaattgtgttttgt 46437506  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 39780552 - 39780485
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| || |||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  39780552 aagagagaaaattatgttgttgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 39780485  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 18431463 - 18431558
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18431463 aagagagaaaatgatgttgctgactgatgagagtggaagaaggagaggtttgtttgtttgttgtgagaagaaagacgattgtgaattgtgatttgt 18431558  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 22788218 - 22788310
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  22788218 aagagagaaaatgatgctgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtgagaagaaagaagattgtgaattgtgatttgt 22788310  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 1014381 - 1014321
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgt 66  Q
    |||||||||||| ||| || |||| ||||||||||||||   ||||||||||||||||||||||    
T  1014381 aagagagaaaattatgttgttgaccgatgagagtggaag---gagaggtttgtttgtttgttgt 1014321  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 16916196 - 16916291
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16916196 aagagagaaaatgttgttgctgactgatgagagtggaagaaggagaggtttgtttgtttgttgtgagaagaaagacgattgtgaattgtgatttgt 16916291  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 4076370 - 4076437
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| || |||||||||||||||   ||| |||||||||||||||||||||| ||||||    
T  4076370 aagagagaaaattatgttgttgactgatgagagtg---gaaagagaggtttgtttgtttgttgtaagaaga 4076437  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 5013910 - 5014005
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5013910 aagatagaaaatgatgttgctgactgatgagagtggaagaagaagaggtttgtttgtttgttgtgagaagaaagacgattgtgaattgtgatttgt 5014005  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 16693254 - 16693162
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  16693254 aagagagaaaatgatgctgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtgagaagaaaggagattgtgaattgtgatttgt 16693162  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 18819511 - 18819578
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  18819511 aagagagaaaattatgttgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 18819578  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 24904417 - 24904484
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| |||||| |||||||||||||||   |||||||||||||||||||||| ||||||    
T  24904417 aagagagaaaattatgttgctgattgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 24904484  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26555761 - 26555669
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  26555761 aagagagaaaatgatgatgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtgagaagaaagaagattgtgaattgtgatttgt 26555669  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 52118580 - 52118488
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||||||||||||||||||||||| || |||||||||||   |||| ||||||||||||||||||||| |||||  || |||||||||||||||||    
T  52118580 aagagagaaaatgatgctgctgaccgacgagagtggaag---gagatgtttgtttgtttgttgtgagaggaaaggagattgtgaattgtgatttgt 52118488  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 26905749 - 26905816
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  26905749 aagagagaaaattatgttgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 26905816  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 36615291 - 36615224
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  36615291 aagagagaaaattatgttgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 36615224  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 25069586 - 25069519
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| || |||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  25069586 aagagagaaaattatgttgttgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 25069519  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 28211468 - 28211535
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| |||||||| |||||||||||||   |||| ||||||||||||||||| ||||||    
T  28211468 aagagagaaaattatgttgctgacttatgagagtggaag---gagatgtttgtttgtttgttgtaagaaga 28211535  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 2125573 - 2125523
Alignment:
Q  20 tgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  2125573 tgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 2125523  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 28535448 - 28535356
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgactgtgaattgtgatttgt 98  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||  || |||||||||||||||||    
T  28535448 aagagagaaaatgatgctgctgactgatgagagtggaag---gagaggtctgtttgtttgttgtgagaagaaaggagattgtgaattgtgatttgt 28535356  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 11463719 - 11463789
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  11463719 aagagagaaaatgatgctgctgactgctgagagtggaagaaggagaggtttgtttgtttgttgtgagaaga 11463789  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 45483709 - 45483642
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  45483709 aagagagaaaattatgttgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtaagaaga 45483642  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 8903521 - 8903451
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||    
T  8903521 aagagagaaaatgatgctgctgactgctgagagtggaagaaggagagatttgtttatttgttgtgagaaga 8903451  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 45067564 - 45067632
Alignment:
Q  5 gagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  45067564 gagagaaaatgatgttgctgactgctgagagtggaagaaggagaggtttgtttgcttgttgtgagaaga 45067632  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 424593 - 424647
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgttt 57  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  424593 aagagagaaaatgatgctgctgactgctgagagtggaagaaggagaggtttgttt 424647  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 17074885 - 17074816
Alignment:
Q  4 agagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    ||||||||||||||| || |||||| || ||||||||||| ||||||| |||||| ||||||||||||||    
T  17074885 agagagaaaatgatgttgttgactgctgggagtggaagaaggagaggtatgtttggttgttgtgagaaga 17074816  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 25634229 - 25634296
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaaga 73  Q
    |||||||||||| ||| ||||||||||||||||||   ||| |||||||||||||||||||||| ||||||    
T  25634229 aagagagaaaattatgttgctgactgatgagagtg---gaaagagaggtttgtttgtttgttgtaagaaga 25634296  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 18113588 - 18113642
Alignment:
Q  3 aagagagaaaatgatgctgctgactgatgagagtggaagaatgagaggtttgttt 57  Q
    |||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  18113588 aagagagaaaatgatgttgctgactgctgagaggggaagaaggagaggtttgttt 18113642  T

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