View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_41 (Length: 216)
Name: NF9299_low_41
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_41 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 10597604 - 10597425
Alignment:
| Q |
17 |
cagagattaagaaaagaaaattgaattattgataaccaattcggttttgtgtctaggaggtcgatcatggaaacaatttacttaccacgatgtgtgatta |
116 |
Q |
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| T |
10597604 |
cagagattaaaaaaagaaaattgaattattgataaccaattcggttttgtgtctaggaggtcgatcatggaaacaatttacttaccacgatgtgtgatga |
10597505 |
T |
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| Q |
117 |
agcgatgtcagatgtatataaaaacaatttatttgta--nnnnnnnnnaccaaaattgtggaaaatataaaaatttctta |
194 |
Q |
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| T |
10597504 |
agcgatgtcatatgtatataaaaacaatttatttgtatttttttttttaccaaaattgtgaaaaatataaaaatttctta |
10597425 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 36651097 - 36651151
Alignment:
| Q |
47 |
gataaccaattcggttttgtgtctaggaggtcgatcatggaaacaatttacttac |
101 |
Q |
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| T |
36651097 |
gataaccaatttggttttatgtctgggaggtcgattatggaagcaatctacttac |
36651151 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 29173708 - 29173627
Alignment:
| Q |
47 |
gataaccaattcggttttgtgtctaggaggtcgatcatggaaacaatttacttaccacgatgtgtgattaagcgatgtcaga |
128 |
Q |
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| T |
29173708 |
gataactaatttggttttatgcctaggaggtcgactatggaagcaatttacttacttcgacgtgtgatggagcgatatcaga |
29173627 |
T |
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Target: scaffold0606 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 8800 - 8860
Alignment:
| Q |
53 |
caattcggttttgtgtctaggaggtcgatcatggaaacaatttacttaccacgatgtgtga |
113 |
Q |
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| T |
8800 |
caattcagttttatgtctaggaggtcgaccataaaaacaatatacttactacaatgtgtga |
8860 |
T |
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