View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_5 (Length: 455)
Name: NF9299_low_5
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 176 - 331
Target Start/End: Complemental strand, 39995068 - 39994915
Alignment:
| Q |
176 |
caatattaatttcttaatcatgtattgcaatcttgtttttcctcttgtaatattatgaacctttgttaatcttaggatgcatatttttgcttcatctata |
275 |
Q |
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| T |
39995068 |
caatattaatttcttaatcatgtaatgcaatcttgtttttcctcttgtaatattatgaacctt-gttaatcttaggatgcatatttt-gcttcatctata |
39994971 |
T |
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| Q |
276 |
ttccaacaactcatccttcaatatgattcttccacctcctccttcttatctgcaat |
331 |
Q |
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| T |
39994970 |
ttccaacaactcatccttcaatatgattcatctacctcctccttcttatctgcaat |
39994915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 39995682 - 39995491
Alignment:
| Q |
2 |
ctttaagaagcatttttatcaagacattgtgtgatccatggatggattgaaagagaatcacacatgcaacaacaaaagaaaagttttgatgacttctaga |
101 |
Q |
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| T |
39995682 |
ctttaagaagcatttttatcaagacattgtgtgatccatggatggattgaaagagaatcacacatgcaacaacaaaagataagttttgatgacttctaga |
39995583 |
T |
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| Q |
102 |
atttataa---------------atatggaacttatacaaaatatggatatgggaataatttactatatcgaggttggtatgaagaaaccaata |
180 |
Q |
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| T |
39995582 |
atttataagtaagtactttttatttatggaacttatacaaaataagg--atgggaataatttactctattgaggttggtatgaagaaaccaata |
39995491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 40009225 - 40009164
Alignment:
| Q |
219 |
cttgtaatattatgaacctttgttaatcttaggatgcatatttttgcttcatctatattccaa |
281 |
Q |
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| T |
40009225 |
cttgtaatattatggacctt-gttaatcttaggatgcatacttttgcttcatctatattccaa |
40009164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 53037914 - 53037959
Alignment:
| Q |
6 |
aagaagcatttttatcaagacattgtgtgatccatggatggattga |
51 |
Q |
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| T |
53037914 |
aagaggcatttttatcaagacattgtgtgatccatggatgtattga |
53037959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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