View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_6 (Length: 446)
Name: NF9299_low_6
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 33479479 - 33479042
Alignment:
| Q |
1 |
attatagtacagagttgtgaaacattctttatagtagatcattaaattatgaagtgaacgtgtacaaaaatttacaactgac-ataaattaagaatgaaa |
99 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
33479479 |
attatagtactgagttgtgaaacattctttatagtagatcattaaattatgaagtgaacgtgtacacaaatttacaactgaccataaattaagaatgaaa |
33479380 |
T |
|
| Q |
100 |
attggttttacaatgtaaacacttttaaatacaaaagactaatttgtcataagatnnnnnnnnnnnnnnnnnnnctttgtttaaagctttaaattaagtt |
199 |
Q |
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| T |
33479379 |
attggttttacaatgtaaacacttttaaatacaaaagactaatttgtcagaagataaaaaaataaaataaaaaactttgtttaaagctttaaattaagtt |
33479280 |
T |
|
| Q |
200 |
aaagaactctagatataattgtatataagactgtatatctatctatataacttcaattataaataaggtcgcttgatgatattgttgaagcagattacgg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33479279 |
aaagaactctagatataattgtatataagactgtatatctatctatataacttcaattataaataaggtcgtttgatgatattgttgaagcagattacgg |
33479180 |
T |
|
| Q |
300 |
gttaagagatataagacatcaggttcaaattcaattcccctccttatttttgtcgtgtggacatgaaaactcaccttttctaaagctatcaaccccaact |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33479179 |
gttaagagatataagacatcaggttcaaattcaattcccctccttatttttgttatgtggacatgaaaactcaccttttctaaagctatcaaccccaact |
33479080 |
T |
|
| Q |
400 |
tacatttttactaatgctcgagttcaagcacaggttct |
437 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
33479079 |
tacatttttactaatgctcgagttcaagcacaagttct |
33479042 |
T |
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