View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9299_low_8 (Length: 429)
Name: NF9299_low_8
Description: NF9299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9299_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 50 - 411
Target Start/End: Original strand, 36756659 - 36757020
Alignment:
| Q |
50 |
ctactacttcaagcacatgaagaagttcagtctccaaaaccaactctgctacggtatcctggtgaggaaggttcagccataatatgctgtaaaatctcaa |
149 |
Q |
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| T |
36756659 |
ctacttcttcaagcacatgaagaagttcagtctccaaaaccaactctgctacggtatcctggtgaagaaggttcagccataatacgctgtaaaatctcaa |
36756758 |
T |
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| Q |
150 |
acccgcatagtaaatagagtcatcgatatatcattatcttgatgagatatacacggttagaccagttagctgtttggaaactcttgtttccacggtggaa |
249 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36756759 |
acccgcatagtaaatagagtcatcaataaatcattatcttgatgagatatacacggttagaccagttagctgtttggaaactcttgtttccacggtggaa |
36756858 |
T |
|
| Q |
250 |
gtaaaatctacctcatgtagttcaaacaaaagcatgtttaatgacatgccaccgggaaattaaacactgtgcaaatcaattatggggttgaatgttaccc |
349 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36756859 |
gtaaaatctacctcatgtagttcaaacaaacgcatgtttaatgacatgccaccgggaaattaaacactgtgcaaatcaattatggggttgaatgttaccc |
36756958 |
T |
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| Q |
350 |
gtactactagtgaaaagatcatcaaaataaagctcagctacaccacaaagctcaacctgttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36756959 |
gtactactagtgaaaagatcatcaaaataaagctcagctacaccacaaagctcaacctgttc |
36757020 |
T |
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