View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9300_high_2 (Length: 404)

Name: NF9300_high_2
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9300_high_2
NF9300_high_2
[»] chr6 (62 HSPs)
chr6 (11-156)||(26884384-26884529)
chr6 (198-344)||(26884569-26884715)
chr6 (11-130)||(26802661-26802780)
chr6 (11-153)||(26861832-26861974)
chr6 (11-130)||(27718228-27718347)
chr6 (11-135)||(28781358-28781482)
chr6 (11-135)||(28786497-28786621)
chr6 (11-135)||(28792618-28792742)
chr6 (11-130)||(27610851-27610970)
chr6 (12-130)||(27604554-27604672)
chr6 (11-130)||(27679165-27679284)
chr6 (11-130)||(27706251-27706370)
chr6 (12-130)||(27698343-27698461)
chr6 (249-342)||(25539093-25539186)
chr6 (238-342)||(26143407-26143511)
chr6 (248-344)||(26647028-26647124)
chr6 (248-344)||(26752996-26753092)
chr6 (248-311)||(27530871-27530934)
chr6 (11-130)||(27592869-27592988)
chr6 (11-130)||(27677463-27677582)
chr6 (249-342)||(25580272-25580365)
chr6 (12-121)||(27427464-27427573)
chr6 (249-341)||(25511488-25511580)
chr6 (30-153)||(27531023-27531146)
chr6 (341-386)||(26884751-26884796)
chr6 (248-305)||(27604280-27604337)
chr6 (248-344)||(26656515-26656610)
chr6 (248-344)||(26762486-26762581)
chr6 (26-153)||(26656223-26656350)
chr6 (26-153)||(26762194-26762321)
chr6 (240-311)||(27214993-27215064)
chr6 (249-331)||(25483609-25483691)
chr6 (248-306)||(27427187-27427245)
chr6 (248-306)||(27718074-27718132)
chr6 (249-342)||(26056472-26056565)
chr6 (249-342)||(26076442-26076535)
chr6 (41-150)||(27337894-27338003)
chr6 (41-150)||(27398634-27398743)
chr6 (95-151)||(26646782-26646838)
chr6 (95-151)||(26752750-26752806)
chr6 (247-306)||(27592596-27592655)
chr6 (247-306)||(27677195-27677254)
chr6 (247-306)||(27679498-27679557)
chr6 (247-306)||(27705979-27706038)
chr6 (248-306)||(27610695-27610753)
chr6 (248-333)||(26802995-26803080)
chr6 (341-386)||(27337551-27337596)
chr6 (341-386)||(27398291-27398336)
chr6 (258-306)||(26862142-26862190)
chr6 (248-336)||(27337640-27337727)
chr6 (248-336)||(27398380-27398467)
chr6 (26-131)||(27214654-27214759)
chr6 (341-382)||(27215133-27215174)
chr6 (26-131)||(27234469-27234574)
chr6 (341-386)||(31285240-31285285)
chr6 (26-153)||(25538774-25538904)
chr6 (341-377)||(26656646-26656682)
chr6 (341-377)||(26762617-26762653)
chr6 (280-336)||(28243376-28243432)
chr6 (248-296)||(28781650-28781698)
chr6 (248-296)||(28786787-28786835)
chr6 (248-296)||(28792908-28792956)
[»] scaffold0277 (4 HSPs)
scaffold0277 (11-128)||(4522-4639)
scaffold0277 (11-128)||(13483-13600)
scaffold0277 (248-306)||(4287-4345)
scaffold0277 (248-296)||(13260-13308)
[»] scaffold0349 (3 HSPs)
scaffold0349 (11-130)||(3269-3389)
scaffold0349 (11-130)||(14205-14324)
scaffold0349 (248-306)||(3114-3172)
[»] scaffold0419 (2 HSPs)
scaffold0419 (11-128)||(7744-7861)
scaffold0419 (248-296)||(8036-8084)
[»] scaffold0003 (2 HSPs)
scaffold0003 (12-121)||(59790-59899)
scaffold0003 (248-306)||(60118-60176)
[»] chr4 (12 HSPs)
chr4 (12-121)||(18073982-18074091)
chr4 (248-306)||(18074310-18074368)
chr4 (252-306)||(18723656-18723710)
chr4 (56-150)||(18723901-18723995)
chr4 (254-306)||(18655048-18655100)
chr4 (252-306)||(18679131-18679185)
chr4 (100-150)||(18679383-18679433)
chr4 (252-306)||(18731075-18731129)
chr4 (56-150)||(18731320-18731414)
chr4 (56-135)||(18655308-18655387)
chr4 (254-296)||(18698981-18699023)
chr4 (100-150)||(18699216-18699266)
[»] chr1 (2 HSPs)
chr1 (247-336)||(28127220-28127309)
chr1 (95-153)||(28127492-28127550)
[»] scaffold0038 (1 HSPs)
scaffold0038 (280-336)||(43538-43594)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 62)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 26884384 - 26884529
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26884384 gaagcattggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 26884483  T
Q  111 ccggctaccattttagtccttggtatcccactttacttaaatcata 156  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  26884484 ccggctaccattttagtcttgggtatcccactttacttaaatcata 26884529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 26884569 - 26884715
Alignment:
Q  198 cccaataatctcgcatgttgcttaaatgttgttgtaattgtagtgtattcactaacttatcttattggacatgaatagaaacgaatacgagtttattggg 297  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||    
T  26884569 cccaataatctcgcttgttgcttaaatgttattgtaattgttgtgtatttattaacttatcttattggacatgaatagatacgaatacgagtttatcggg 26884668  T
Q  298 aagatagtcgaagatatatccgacaaaatcaatcgtgttgttttaca 344  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26884669 aagatagtcgaagatatctccgacaaaatcaatcgtgttgttttaca 26884715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26802661 - 26802780
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| || | |||||||||||    
T  26802661 gaagcattggctgagcatgaaaaaaggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgt 26802760  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  26802761 ccggctaccatgatagtcct 26802780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 26861832 - 26861974
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||| |||  |||| |||||||||||    
T  26861832 gaagcattggctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgt 26861931  T
Q  111 ccggctaccattttagtccttggtatcccactttacttaaatc 153  Q
    | |||||||||||||||||| |||| ||||||| || ||||||    
T  26861932 caggctaccattttagtcctgggtaccccacttaacataaatc 26861974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 27718347 - 27718228
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| || | |||||||||||    
T  27718347 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgt 27718248  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  27718247 ccggctaccatgatagtcct 27718228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 28781358 - 28781482
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||  ||||| |||  |||| |||||||||||    
T  28781358 gaagcattggctggacatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28781457  T
Q  111 ccggctaccattttagtccttggta 135  Q
    |||||||||||| ||||||| ||||    
T  28781458 ccggctaccattctagtcctgggta 28781482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 28786497 - 28786621
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||  ||||| |||  |||| |||||||||||    
T  28786497 gaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28786596  T
Q  111 ccggctaccattttagtccttggta 135  Q
    |||||||||||| ||||||| ||||    
T  28786597 ccggctaccattctagtcctgggta 28786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 28792618 - 28792742
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||  ||||| |||  |||| |||||||||||    
T  28792618 gaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28792717  T
Q  111 ccggctaccattttagtccttggta 135  Q
    |||||||||||| ||||||| ||||    
T  28792718 ccggctaccattctagtcctgggta 28792742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 27610970 - 27610851
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| || | ||| ||||| |    
T  27610970 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaactttt 27610871  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  27610870 ccggctaccatgatagtcct 27610851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 27604672 - 27604554
Alignment:
Q  12 aagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtc 111  Q
    |||||| |||||| ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||| |||| || | ||||||||| ||    
T  27604672 aagcattggctgagcataaaaaaaggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttc 27604573  T
Q  112 cggctaccattttagtcct 130  Q
    ||||||||||  |||||||    
T  27604572 cggctaccatgatagtcct 27604554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 27679165 - 27679284
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||| |||| |||| || | |||||||||||    
T  27679165 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgt 27679264  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  27679265 ccggctaccatgatagtcct 27679284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 27706370 - 27706251
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||  | | |||||||||||||||||| ||||||||  |||| |||| || | |||||||||||    
T  27706370 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 27706271  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  27706270 ccggctaccatgatagtcct 27706251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 27698461 - 27698343
Alignment:
Q  12 aagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtc 111  Q
    |||||| |||||| |||||||| |||||||||||||||  | | |||||||||||||||||| ||||||||  |||| |||| || | ||||||||||||    
T  27698461 aagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtc 27698362  T
Q  112 cggctaccattttagtcct 130  Q
    ||||||||||  |||||||    
T  27698361 cggctaccatgatagtcct 27698343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 25539093 - 25539186
Alignment:
Q  249 ctaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgtttta 342  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||| || ||| |||| ||||||| |||| |||||    
T  25539093 ctaacttatcttattggacatgaatagatatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgttttttta 25539186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 26143407 - 26143511
Alignment:
Q  238 tagtgtattcactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttg 337  Q
    |||||||||  |||| ||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||| || ||| |||| ||||||| ||||     
T  26143407 tagtgtattttctaatttatcttattggacatgaatagatatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgttt 26143506  T
Q  338 tttta 342  Q
    |||||    
T  26143507 tttta 26143511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 26647028 - 26647124
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgttttaca 344  Q
    ||||||||||||| | ||||||||||||| | |||||| ||||||||||||||||||||||||| || ||| |||| |||||||||||  |||||||    
T  26647028 actaacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgtcattttaca 26647124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 26752996 - 26753092
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgttttaca 344  Q
    ||||||||||||| | ||||||||||||| | |||||| ||||||||||||||||||||||||| || ||| |||| |||||||||||  |||||||    
T  26752996 actaacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgtcattttaca 26753092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 27530934 - 27530871
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaaga 311  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  27530934 actaacttatcttattggacatgaatagatatgaatacgagtttattggaaagatagtcgaaga 27530871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 27592988 - 27592869
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||  | | |||||||||||||||||| ||||||||   ||| |||| || | |||||||||||    
T  27592988 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgt 27592889  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  27592888 ccggctaccatgatagtcct 27592869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 27677582 - 27677463
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||  | | | |||||||||||||||| ||||||||  |||| |||| || | |||||||||||    
T  27677582 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 27677483  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  27677482 ccggctaccatgatagtcct 27677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 25580272 - 25580365
Alignment:
Q  249 ctaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgtttta 342  Q
    |||||||||||||||||||| ||||||| | |||||| ||||||||| ||||||||||||||| || ||| |||| ||||||| |||| |||||    
T  25580272 ctaacttatcttattggacacgaatagatatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgttttttta 25580365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 27427573 - 27427464
Alignment:
Q  12 aagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtc 111  Q
    |||||| |||||| |||||||| |||||||||||||||| | | ||||||||||||||||||| ||||||| ||||| |||| |  | |||||||||| |    
T  27427573 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 27427474  T
Q  112 cggctaccat 121  Q
    | ||||||||    
T  27427473 cagctaccat 27427464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 25511488 - 25511580
Alignment:
Q  249 ctaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgtttt 341  Q
    |||||||| |||||||||||||||||||   |||||| ||||||||| ||||||||||||||| || ||| |||| ||||||| |||| ||||    
T  25511488 ctaacttaccttattggacatgaatagatctgaatacaagtttattgagaagatagtcgaagacatctccaacaagatcaatcatgttttttt 25511580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 27531146 - 27531023
Alignment:
Q  30 aaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtcc 129  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| |||||||   ||| |||| ||||  ||||||||||| ||| | |||| ||  |     
T  27531146 aaaaaaagtttcaaaatgataaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaacttgtctggccagcattataaaca 27531047  T
Q  130 ttggtatcccactttacttaaatc 153  Q
    | |||| |||||||||||||||||    
T  27531046 tgggtagcccactttacttaaatc 27531023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 26884751 - 26884796
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaacgaaggggt 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  26884751 tacaacaattaaaattgcttcttgataaggaatctaacgaaggggt 26884796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 27604337 - 27604280
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagt 305  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||    
T  27604337 actaacttatcttattggacatgaatagatatgaatacgagcttattggaaagatagt 27604280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 26656515 - 26656610
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgttttaca 344  Q
    ||||||||||||  ||| ||||||||||| | |||||| ||||||||| ||| |||||| |||| || |||||||| |||||||||||| |||||||    
T  26656515 actaacttatctc-ttgtacatgaatagatatgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgtttttttaca 26656610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 26762486 - 26762581
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgttttaca 344  Q
    ||||||||||||  ||| ||||||||||| | |||||| ||||||||| ||| |||||| |||| || |||||||| |||||||||||| |||||||    
T  26762486 actaacttatctc-ttgtacatgaatagatatgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgtttttttaca 26762581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 26656223 - 26656350
Alignment:
Q  26 catgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccatttta 125  Q
    |||||||| | ||| |||||| | ||||| |||||| |||||||| ||| |||||| |||||| |||   ||| ||| |||||||| |||||||||| ||    
T  26656223 catgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgta 26656322  T
Q  126 gtccttggtatcccactttacttaaatc 153  Q
    |||   |||| |||||||||||||||||    
T  26656323 gtcaagggtaccccactttacttaaatc 26656350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 26762194 - 26762321
Alignment:
Q  26 catgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccatttta 125  Q
    |||||||| | ||| |||||| | ||||| |||||| |||||||| ||| |||||| |||||| |||   ||| ||| |||||||| |||||||||| ||    
T  26762194 catgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgta 26762293  T
Q  126 gtccttggtatcccactttacttaaatc 153  Q
    |||   |||| |||||||||||||||||    
T  26762294 gtcaagggtaccccactttacttaaatc 26762321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 27214993 - 27215064
Alignment:
Q  240 gtgtattcactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaaga 311  Q
    |||||| ||||||||||||||||||||||| || ||| | |||||| ||||||||| ||||||||| |||||    
T  27214993 gtgtatgcactaacttatcttattggacattaacagatatgaatacaagtttattgagaagatagttgaaga 27215064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 25483609 - 25483691
Alignment:
Q  249 ctaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatc 331  Q
    |||||||||||||||||||||||||||| | ||| || ||||||||| |||||||||| || | || ||| |||| |||||||    
T  25483609 ctaacttatcttattggacatgaatagatatgaacacaagtttattgagaagatagtccaatacatctccaacaatatcaatc 25483691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 27427245 - 27427187
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||    
T  27427245 actaacttatattattggacatgaatagatatgaatacgagcttattggaaagatagtc 27427187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 27718132 - 27718074
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||| |||||||||||||| | |||||||||||||||||  ||||||||    
T  27718132 actaacttatcttactggacatgaatagatatgaatacgagtttattggagagatagtc 27718074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 26056472 - 26056565
Alignment:
Q  249 ctaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgtttta 342  Q
    |||||||| |||||||||||||||||||   |||| | ||||||||| ||||||||||||||  || ||| |||| ||||||| |||| |||||    
T  26056472 ctaacttaccttattggacatgaatagatctgaatgcaagtttattgagaagatagtcgaaggcatctccaacaagatcaatcatgttttttta 26056565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 26076442 - 26076535
Alignment:
Q  249 ctaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgttgtttta 342  Q
    |||||||| |||||||||||||||||||   |||| | ||||||||| ||||||||||||||  || ||| |||| ||||||| |||| |||||    
T  26076442 ctaacttaccttattggacatgaatagatctgaatgcaagtttattgagaagatagtcgaaggcatctccaacaagatcaatcatgttttttta 26076535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 27338003 - 27337894
Alignment:
Q  41 caaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtccttggtatccca 140  Q
    |||||| | ||||| ||||||||||||||| ||  |||||| |||||| | |  |||| ||||||||| |||||| ||||||||||||   |||| ||||    
T  27338003 caaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattttagtcaagggtacccca 27337904  T
Q  141 ctttacttaa 150  Q
    ||||||||||    
T  27337903 ctttacttaa 27337894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 27398743 - 27398634
Alignment:
Q  41 caaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtccttggtatccca 140  Q
    |||||| | ||||| ||||||||||||||| ||  |||||| |||||| | |  |||| ||||||||| |||||| ||||||||||||   |||| ||||    
T  27398743 caaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattttagtcaagggtacccca 27398644  T
Q  141 ctttacttaa 150  Q
    ||||||||||    
T  27398643 ctttacttaa 27398634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 26646782 - 26646838
Alignment:
Q  95 caagttgctaacttgtccggctaccattttagtccttggtatcccactttacttaaa 151  Q
    |||| ||||||||||||||| ||||||| ||||||| |||| |||||||||||||||    
T  26646782 caagctgctaacttgtccggataccattatagtcctgggtaccccactttacttaaa 26646838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 26752750 - 26752806
Alignment:
Q  95 caagttgctaacttgtccggctaccattttagtccttggtatcccactttacttaaa 151  Q
    |||| ||||||||||||||| ||||||| ||||||| |||| |||||||||||||||    
T  26752750 caagctgctaacttgtccggataccattatagtcctgggtaccccactttacttaaa 26752806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 27592655 - 27592596
Alignment:
Q  247 cactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||||||| ||||||||||| | |||||| || ||||||| |||||||||    
T  27592655 cactaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtc 27592596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 27677254 - 27677195
Alignment:
Q  247 cactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||||||| ||||||||||| | |||||| || ||||||| |||||||||    
T  27677254 cactaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtc 27677195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 27679498 - 27679557
Alignment:
Q  247 cactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||||||| ||||||||||| | |||||| || ||||||| |||||||||    
T  27679498 cactaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtc 27679557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 27706038 - 27705979
Alignment:
Q  247 cactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||||||| ||||||||||| | |||||| || ||||||| |||||||||    
T  27706038 cactaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtc 27705979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 27610753 - 27610695
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||||||| |||||||||| | ||||||||||||| |||  ||||||||    
T  27610753 actaacttatcttattgggcatgaatagatatgaatacgagtttactggagagatagtc 27610695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 26802995 - 26803080
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgt 333  Q
    ||||||||||||| ||||||||||||||| | |||||| |||| |||||  |||||||| || | || ||| |||| |||||||||    
T  26802995 actaacttatcttgttggacatgaatagatatgaatacaagttgattggagagatagtcaaatacatctccaacaagatcaatcgt 26803080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 27337596 - 27337551
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaacgaaggggt 386  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||    
T  27337596 tacaacaagtaaaattgcttcttgatgaggaatctgatgaaggggt 27337551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 27398336 - 27398291
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaacgaaggggt 386  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||    
T  27398336 tacaacaagtaaaattgcttcttgatgaggaatctgatgaaggggt 27398291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 26862142 - 26862190
Alignment:
Q  258 cttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||| |||||||| | ||||| |||||||||||||||||||||    
T  26862142 cttattggacgtgaatagatatgaatatgagtttattgggaagatagtc 26862190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 336
Target Start/End: Complemental strand, 27337727 - 27337640
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgtt 336  Q
    |||||||||||| |||||||||||||||| | || |||||| |||||| ||| ||||||||| | || ||||| |  ||||||||||||    
T  27337727 actaacttatct-attggacatgaatagatatgagtacgagcttattgagaatatagtcgaacacatttccgataggatcaatcgtgtt 27337640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 336
Target Start/End: Complemental strand, 27398467 - 27398380
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgtt 336  Q
    |||||||||||| |||||||||||||||| | || |||||| |||||| ||| ||||||||| | || ||||| |  ||||||||||||    
T  27398467 actaacttatct-attggacatgaatagatatgagtacgagcttattgagaatatagtcgaacacatttccgataggatcaatcgtgtt 27398380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 27214654 - 27214759
Alignment:
Q  26 catgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccatttta 125  Q
    |||||| | |||||||||||| | ||||| ||||||||| ||||||||  |||||| || ||| | |  |||| ||||||||| || ||||| |||| ||    
T  27214654 catgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcattata 27214753  T
Q  126 gtcctt 131  Q
    ||||||    
T  27214754 gtcctt 27214759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 27215133 - 27215174
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaacgaag 382  Q
    ||||||||||||||||||||||||| |||| |||||| ||||    
T  27215133 tacaacaagtaaaattgcttcttgacaagggatctaaggaag 27215174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 27234574 - 27234469
Alignment:
Q  26 catgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccatttta 125  Q
    |||||| | |||||||||||| | ||||| ||||||||| ||||||||  |||||| || ||| | |  |||| ||||||||| || ||||| |||| ||    
T  27234574 catgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcattata 27234475  T
Q  126 gtcctt 131  Q
    ||||||    
T  27234474 gtcctt 27234469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 31285240 - 31285285
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaacgaaggggt 386  Q
    |||||||||| ||||||||||||||||||||| ||||  |||||||    
T  31285240 tacaacaagtgaaattgcttcttgataaggaaactaataaaggggt 31285285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 25538774 - 25538904
Alignment:
Q  26 catgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccatttta 125  Q
    |||||| | |||||||||||| || || | ||||||||| | ||||  | |||||| || ||| | |  |||| |||||||||||||||||| |||| ||    
T  25538774 catgaagagaggtttcaaaataatgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattata 25538873  T
Q  126 gtcc---ttggtatcccactttacttaaatc 153  Q
    ||||   | |||| |||||||||||||||||    
T  25538874 gtcctcatgggtaccccactttacttaaatc 25538904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 26656646 - 26656682
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaa 377  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  26656646 tacaacaagtgaaattgcttcttgataagggatctaa 26656682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 26762617 - 26762653
Alignment:
Q  341 tacaacaagtaaaattgcttcttgataaggaatctaa 377  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  26762617 tacaacaagtgaaattgcttcttgataagggatctaa 26762653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 28243376 - 28243432
Alignment:
Q  280 gaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgtt 336  Q
    |||||||||||||||| |||||||||  || || |||||  ||||||||||||||||    
T  28243376 gaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgtt 28243432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 28781650 - 28781698
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgg 296  Q
    |||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  28781650 actaacttatcttatatgacatgaatagatatgaatacaagtttattgg 28781698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 28786787 - 28786835
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgg 296  Q
    |||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  28786787 actaacttatcttatatgacatgaatagatatgaatacaagtttattgg 28786835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 28792908 - 28792956
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgg 296  Q
    ||||||||||||||| |||||| |||||| | |||||| ||||||||||    
T  28792908 actaacttatcttatcggacattaatagatatgaatacaagtttattgg 28792956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 4639 - 4522
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||  ||||| |||  |||| |||||||||||    
T  4639 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 4540  T
Q  111 ccggctaccattttagtc 128  Q
    |||||||||||| |||||    
T  4539 ccggctaccattctagtc 4522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 13600 - 13483
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||  |||||||| |||||||||||||||||| ||||||||||| | ||||| | ||||||  ||||| |||  |||| |||||||||||    
T  13600 gaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgt 13501  T
Q  111 ccggctaccattttagtc 128  Q
    |||||||||||| |||||    
T  13500 ccggctaccattctagtc 13483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 4345 - 4287
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    ||||||||||||||| |||||| |||||| | |||||| ||||||||||  ||||||||    
T  4345 actaacttatcttatcggacattaatagatatgaatacaagtttattggagagatagtc 4287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 13308 - 13260
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgg 296  Q
    |||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  13308 actaacttatcttatatgacatgaatagatatgaatacaagtttattgg 13260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 3389 - 3269
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataag-gataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttg 109  Q
    ||||||| |||||| |||||||| |||||||||||||||  |  | ||||||||||||||||||||||||||| ||||| |||| || | ||||||||||    
T  3389 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttg 3290  T
Q  110 tccggctaccattttagtcct 130  Q
    ||||||||||||  |||||||    
T  3289 tccggctaccatgatagtcct 3269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 14324 - 14205
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||| |||||||| |||||||||||||||  | | |||||||||||||||||| ||||||||  |||| |||| || | |||||||||||    
T  14324 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 14225  T
Q  111 ccggctaccattttagtcct 130  Q
    |||||||||||  |||||||    
T  14224 ccggctaccatgatagtcct 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 3172 - 3114
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||||||| |||||||||||||| | |||||||||||||||||  ||||||||    
T  3172 actaacttatcttactggacatgaatagatatgaatacgagtttattggagagatagtc 3114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 7744 - 7861
Alignment:
Q  11 gaagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 110  Q
    ||||||| |||||  |||||||| |||||||||||||||||| ||||||||||| | ||||| | ||||||  ||||| |||  |||| |||||||||||    
T  7744 gaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgt 7843  T
Q  111 ccggctaccattttagtc 128  Q
    |||||||||||| |||||    
T  7844 ccggctaccattctagtc 7861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 8036 - 8084
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgg 296  Q
    |||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  8036 actaacttatcttatatgacatgaatagatatgaatacaagtttattgg 8084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 59790 - 59899
Alignment:
Q  12 aagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtc 111  Q
    |||||| |||||| |||||||| |||||||||||||||| | | ||||||||||||||||||| ||||||| ||||| |||| |  | |||||||||| |    
T  59790 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 59889  T
Q  112 cggctaccat 121  Q
    | ||||||||    
T  59890 cagctaccat 59899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 60118 - 60176
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||    
T  60118 actaacttatattattggacatgaatagatatgaatacgagcttattggaaagatagtc 60176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 18073982 - 18074091
Alignment:
Q  12 aagcataggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtc 111  Q
    |||||| |||||| |||||||| |||||||||||||||| | | ||||||||||||||||||| ||||||| ||||| |||| |  | |||||||||| |    
T  18073982 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 18074081  T
Q  112 cggctaccat 121  Q
    | ||||||||    
T  18074082 cagctaccat 18074091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 18074310 - 18074368
Alignment:
Q  248 actaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    |||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||    
T  18074310 actaacttatattattggacatgaatagatatgaatacgagcttattggaaagatagtc 18074368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 18723710 - 18723656
Alignment:
Q  252 acttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    ||||||||||||||||||||||||| | |||||| |||||||||| |||||||||    
T  18723710 acttatcttattggacatgaatagatatgaatacaagtttattggaaagatagtc 18723656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 18723995 - 18723901
Alignment:
Q  56 aacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtccttggtatcccactttacttaa 150  Q
    ||||||||| ||||||| | ||||||  ||||| |||   ||| ||||||||||||||||||||||||||||||| ||||  || ||||||||||    
T  18723995 aacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcctgggtactcctctttacttaa 18723901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 18655100 - 18655048
Alignment:
Q  254 ttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    ||||||||||||||||||||||| | |||||| |||||||||| |||||||||    
T  18655100 ttatcttattggacatgaatagatatgaatacaagtttattggaaagatagtc 18655048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 18679185 - 18679131
Alignment:
Q  252 acttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||  ||||||||    
T  18679185 acttatcttattggacatgaatagatatgaatacaagtttattggagagatagtc 18679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 18679433 - 18679383
Alignment:
Q  100 tgctaacttgtccggctaccattttagtccttggtatcccactttacttaa 150  Q
    ||||||||||||||||||||||||||||||| ||||  || ||||||||||    
T  18679433 tgctaacttgtccggctaccattttagtcctgggtactcctctttacttaa 18679383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 18731129 - 18731075
Alignment:
Q  252 acttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtc 306  Q
    ||||||||||||||||||||||||| | |||||| |||||||||  |||||||||    
T  18731129 acttatcttattggacatgaatagatatgaatacaagtttattgaaaagatagtc 18731075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 18731414 - 18731320
Alignment:
Q  56 aacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtccttggtatcccactttacttaa 150  Q
    ||||||||| ||||||| | ||||||  ||||| |||   ||| ||||||||||||||||||||||||||||| | ||||  || ||||||||||    
T  18731414 aacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcatgggtactcctctttacttaa 18731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 18655387 - 18655308
Alignment:
Q  56 aacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttagtccttggta 135  Q
    ||||||||| ||||||| | ||||||  ||||| |||   ||| ||||||||||||||||||||||| ||||||| ||||    
T  18655387 aacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcctgggta 18655308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 18699023 - 18698981
Alignment:
Q  254 ttatcttattggacatgaatagaaacgaatacgagtttattgg 296  Q
    ||||||||||||||||||||||| | |||||| ||||||||||    
T  18699023 ttatcttattggacatgaatagatatgaatacaagtttattgg 18698981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 18699266 - 18699216
Alignment:
Q  100 tgctaacttgtccggctaccattttagtccttggtatcccactttacttaa 150  Q
    |||||||||||||||||||||||||||| || ||||  || ||||||||||    
T  18699266 tgctaacttgtccggctaccattttagttctgggtactcctctttacttaa 18699216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 28127309 - 28127220
Alignment:
Q  247 cactaacttatcttattggacatgaatagaaacgaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgtt 336  Q
    |||||||||||||||||||| || |||||| | |||||| ||||||||  ||||||| || |||| ||||||||||  ||||||||||||    
T  28127309 cactaacttatcttattggagattaatagatatgaatacaagtttattcagaagataatcaaagacatatccgacaggatcaatcgtgtt 28127220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 28127550 - 28127492
Alignment:
Q  95 caagttgctaacttgtccggctaccattttagtccttggtatcccactttacttaaatc 153  Q
    |||| ||||||||||||||||||||||| ||||||  |||| || ||| ||||||||||    
T  28127550 caagctgctaacttgtccggctaccattatagtccagggtaccctactatacttaaatc 28127492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 43538 - 43594
Alignment:
Q  280 gaatacgagtttattgggaagatagtcgaagatatatccgacaaaatcaatcgtgtt 336  Q
    |||||||||||||||| |||||||||  || || |||||  ||||||||||||||||    
T  43538 gaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgtt 43594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University