View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9300_high_3 (Length: 388)
Name: NF9300_high_3
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_high_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 37634415 - 37634775
Alignment:
| Q |
19 |
cggaactggttgagagaccaagcccaaccggcaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37634415 |
cggaactggttgagagaccaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
37634514 |
T |
|
| Q |
119 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634515 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
37634614 |
T |
|
| Q |
219 |
gtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagg |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37634615 |
gtcaagagagtcataaacattttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaga |
37634714 |
T |
|
| Q |
319 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634715 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
37634775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 37637329 - 37637689
Alignment:
| Q |
19 |
cggaactggttgagagaccaagcccaaccggcaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637329 |
cggaactggttgagagaccaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
37637428 |
T |
|
| Q |
119 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637429 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
37637528 |
T |
|
| Q |
219 |
gtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagg |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37637529 |
gtcaagagagtcataaacattttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaga |
37637628 |
T |
|
| Q |
319 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
379 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637629 |
ccagtattgcagattctatatttgtaggtttttcccggcttcattgtgtagagtggctcat |
37637689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 37640243 - 37640603
Alignment:
| Q |
19 |
cggaactggttgagagaccaagcccaaccggcaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
37640243 |
cggaactggttgagagaccaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaa |
37640342 |
T |
|
| Q |
119 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640343 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
37640442 |
T |
|
| Q |
219 |
gtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagg |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640443 |
gtcaagagagtcataaacattttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaga |
37640542 |
T |
|
| Q |
319 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640543 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
37640603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 37648530 - 37648890
Alignment:
| Q |
19 |
cggaactggttgagagaccaagcccaaccggcaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
37648530 |
cggaactggttgagagaccaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaa |
37648629 |
T |
|
| Q |
119 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648630 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
37648729 |
T |
|
| Q |
219 |
gtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagg |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648730 |
gtcaagagagtcataaacattttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaga |
37648829 |
T |
|
| Q |
319 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648830 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
37648890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 37645617 - 37645977
Alignment:
| Q |
19 |
cggaactggttgagagaccaagcccaaccggcaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645617 |
cggaactggttgagagaccaagcccaaccgacaggtgcagatggtagcaaaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
37645716 |
T |
|
| Q |
119 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645717 |
ctagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
37645816 |
T |
|
| Q |
219 |
gtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagg |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645817 |
gtcaagagagtcataaacattttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaga |
37645916 |
T |
|
| Q |
319 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
379 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645917 |
ccagtattgcagattctatatttgtaggtttttcccggcttcattgtgtagagtggctcat |
37645977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 37651442 - 37651802
Alignment:
| Q |
19 |
cggaactggttgagagaccaagcccaaccggcaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
37651442 |
cggaactggttgagagaccaagcccaaccgacaggtgcaggtggtagcataggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaa |
37651541 |
T |
|
| Q |
119 |
gtagattgtacttggtcatacgggtggaggcaatcatgtaatagtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
37651542 |
gtagattgtacttggtcatacgggtggaggcaaccatgtaatagtcctttggctctttatcggcggtcacgaggacagtgtagcattgcccaacatgaac |
37651641 |
T |
|
| Q |
219 |
gtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagg |
318 |
Q |
| |
|
||| ||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651642 |
gtcgagagagtcatagacattttgaacaacatgtgagccttcagtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaga |
37651741 |
T |
|
| Q |
319 |
ccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctcat |
379 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37651742 |
ccagtattgcagattctatatttgtaggtttttcccggcttcattgtgtatagtggctcat |
37651802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 32381772 - 32381849
Alignment:
| Q |
297 |
gaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtgg |
374 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
32381772 |
gaagttaagggagtttttaagaccaacattgcagattctgtatttgtaggtttttcctggcttcattgtgaagagtgg |
32381849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 378
Target Start/End: Original strand, 32387929 - 32388123
Alignment:
| Q |
184 |
gtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccat |
283 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||||||| || |||||||| ||||||| ||| || ||||| |||| || | ||||||| | |
|
|
| T |
32387929 |
gtcacgaggacagagaagcattgtcctacgtgaacgtcaagggaatcataaacgttttgaacggtgtgggaaccttccatttcgacgagcttcattgggt |
32388028 |
T |
|
| Q |
284 |
gtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctca |
378 |
Q |
| |
|
| |||||| ||||||||||| | ||||| || ||| ||||||| |||||| |||||||| ||||| |||| |||| |||||||||||||| |
|
|
| T |
32388029 |
gatcttggattctgaagttaagagaatccttgagaccaacgttgcagagtctgtacttgtaggtctttcctggctccattttgtagagtggctca |
32388123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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