View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9300_high_7 (Length: 242)

Name: NF9300_high_7
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9300_high_7
NF9300_high_7
[»] chr2 (23 HSPs)
chr2 (3-233)||(1327984-1328202)
chr2 (4-99)||(18840968-18841065)
chr2 (3-99)||(2438674-2438772)
chr2 (3-99)||(37411199-37411297)
chr2 (5-94)||(15972881-15972972)
chr2 (43-99)||(37419802-37419858)
chr2 (1-53)||(21782821-21782873)
chr2 (4-92)||(5367199-5367289)
chr2 (3-99)||(37558983-37559081)
chr2 (5-112)||(2415325-2415434)
chr2 (15-99)||(24009314-24009399)
chr2 (5-53)||(2331802-2331850)
chr2 (43-99)||(28596517-28596573)
chr2 (3-96)||(38117117-38117212)
chr2 (44-99)||(26769571-26769626)
chr2 (44-115)||(27084318-27084389)
chr2 (43-113)||(4882626-4882696)
chr2 (5-51)||(28412358-28412404)
chr2 (3-58)||(34691801-34691858)
chr2 (3-58)||(34714213-34714270)
chr2 (43-99)||(12224271-12224327)
chr2 (3-56)||(18276527-18276582)
chr2 (44-112)||(19942314-19942382)
[»] scaffold0652 (1 HSPs)
scaffold0652 (1-99)||(417-517)
[»] chr3 (34 HSPs)
chr3 (2-114)||(11251983-11252095)
chr3 (17-114)||(40993275-40993374)
chr3 (4-100)||(10954959-10955057)
chr3 (1-84)||(45451557-45451642)
chr3 (4-115)||(55401082-55401195)
chr3 (8-114)||(7171513-7171620)
chr3 (61-115)||(8039284-8039338)
chr3 (61-119)||(25074861-25074919)
chr3 (1-114)||(27277780-27277893)
chr3 (43-99)||(4987235-4987291)
chr3 (43-114)||(8039764-8039835)
chr3 (3-58)||(8383263-8383320)
chr3 (61-99)||(12100335-12100373)
chr3 (4-99)||(18426956-18427053)
chr3 (60-114)||(21211359-21211413)
chr3 (5-99)||(24204996-24205092)
chr3 (3-99)||(28918007-28918107)
chr3 (42-114)||(17005548-17005620)
chr3 (6-99)||(20503474-20503569)
chr3 (3-58)||(3618887-3618942)
chr3 (49-116)||(27505305-27505372)
chr3 (40-99)||(35222983-35223042)
chr3 (64-99)||(40052381-40052416)
chr3 (60-99)||(52369852-52369891)
chr3 (7-99)||(8789503-8789599)
chr3 (65-115)||(16789584-16789634)
chr3 (65-99)||(34185067-34185101)
chr3 (64-121)||(3163964-3164021)
chr3 (73-114)||(3730108-3730149)
chr3 (4-53)||(8412948-8412997)
chr3 (20-94)||(23657762-23657838)
chr3 (3-97)||(26492162-26492258)
chr3 (5-58)||(20691327-20691382)
chr3 (43-95)||(41961598-41961650)
[»] chr1 (41 HSPs)
chr1 (2-115)||(27965939-27966052)
chr1 (4-99)||(42359404-42359501)
chr1 (4-114)||(18190048-18190160)
chr1 (1-99)||(40181875-40181975)
chr1 (5-113)||(40258874-40258984)
chr1 (3-99)||(5898221-5898319)
chr1 (4-99)||(37598839-37598935)
chr1 (3-112)||(1486646-1486762)
chr1 (1-58)||(25452146-25452203)
chr1 (1-114)||(38075909-38076025)
chr1 (8-114)||(43492434-43492542)
chr1 (3-92)||(2896083-2896174)
chr1 (3-96)||(46348341-46348436)
chr1 (43-99)||(9828103-9828159)
chr1 (3-120)||(38078595-38078714)
chr1 (3-99)||(22515842-22515940)
chr1 (5-115)||(22794017-22794129)
chr1 (43-97)||(40917808-40917862)
chr1 (4-114)||(51410031-51410144)
chr1 (17-99)||(1815277-1815361)
chr1 (5-75)||(21530697-21530769)
chr1 (6-115)||(18337338-18337449)
chr1 (3-114)||(20157284-20157403)
chr1 (48-112)||(33202956-33203020)
chr1 (3-91)||(11605898-11605988)
chr1 (48-99)||(16297236-16297287)
chr1 (64-99)||(19562570-19562605)
chr1 (3-75)||(36878467-36878541)
chr1 (5-83)||(52903257-52903334)
chr1 (40-114)||(19637813-19637887)
chr1 (5-58)||(2288165-2288218)
chr1 (58-99)||(15323231-15323272)
chr1 (5-91)||(28674808-28674896)
chr1 (3-53)||(38503326-38503378)
chr1 (62-99)||(46940763-46940800)
chr1 (9-90)||(2784568-2784651)
chr1 (3-114)||(9690213-9690325)
chr1 (68-104)||(20629018-20629054)
chr1 (42-118)||(32461389-32461465)
chr1 (42-97)||(32899937-32899993)
chr1 (43-99)||(47989556-47989612)
[»] chr4 (36 HSPs)
chr4 (3-99)||(23292941-23293039)
chr4 (6-91)||(9996849-9996936)
chr4 (3-110)||(21945509-21945618)
chr4 (43-99)||(53381545-53381602)
chr4 (1-53)||(56257937-56257989)
chr4 (3-91)||(8423681-8423771)
chr4 (43-97)||(10133756-10133811)
chr4 (3-114)||(28964188-28964301)
chr4 (5-119)||(12895209-12895325)
chr4 (43-92)||(30982829-30982878)
chr4 (3-99)||(49431031-49431130)
chr4 (60-99)||(944617-944656)
chr4 (40-91)||(56049921-56049972)
chr4 (49-99)||(3947716-3947766)
chr4 (4-58)||(17425387-17425441)
chr4 (55-99)||(19482739-19482783)
chr4 (43-95)||(22234838-22234890)
chr4 (5-99)||(24343515-24343617)
chr4 (1-94)||(35161040-35161135)
chr4 (3-91)||(2361938-2362028)
chr4 (3-83)||(29205450-29205532)
chr4 (6-114)||(30103297-30103406)
chr4 (3-53)||(16184823-16184873)
chr4 (60-114)||(17876231-17876285)
chr4 (43-97)||(34306761-34306815)
chr4 (3-98)||(38846968-38847065)
chr4 (4-71)||(54580006-54580075)
chr4 (43-112)||(4157197-4157266)
chr4 (43-112)||(4157484-4157553)
chr4 (5-46)||(20179364-20179405)
chr4 (4-53)||(49652975-49653024)
chr4 (66-114)||(16184902-16184950)
chr4 (44-116)||(21345471-21345543)
chr4 (59-99)||(28084588-28084628)
chr4 (59-99)||(32910627-32910667)
chr4 (71-99)||(40784029-40784057)
[»] chr7 (38 HSPs)
chr7 (3-99)||(32287418-32287516)
chr7 (43-99)||(26033405-26033461)
chr7 (43-115)||(598256-598328)
chr7 (3-96)||(26733310-26733405)
chr7 (3-114)||(1401031-1401142)
chr7 (3-95)||(21880158-21880252)
chr7 (4-95)||(5835254-5835347)
chr7 (5-99)||(5938480-5938582)
chr7 (43-99)||(24339701-24339757)
chr7 (27-114)||(3652250-3652337)
chr7 (3-99)||(20549797-20549895)
chr7 (3-99)||(27093368-27093466)
chr7 (3-99)||(27184835-27184933)
chr7 (49-99)||(5409786-5409836)
chr7 (3-115)||(21864812-21864928)
chr7 (3-74)||(22484031-22484104)
chr7 (49-115)||(43027403-43027469)
chr7 (42-98)||(7133228-7133285)
chr7 (3-52)||(29787373-29787422)
chr7 (55-99)||(17852060-17852104)
chr7 (65-117)||(24105748-24105800)
chr7 (2-58)||(3721098-3721156)
chr7 (1-48)||(12289118-12289165)
chr7 (3-99)||(15680815-15680913)
chr7 (6-53)||(30731046-30731093)
chr7 (4-46)||(7758329-7758371)
chr7 (5-59)||(9756983-9757037)
chr7 (61-99)||(12278901-12278939)
chr7 (43-113)||(32308179-32308249)
chr7 (60-114)||(38804489-38804543)
chr7 (3-44)||(2424620-2424661)
chr7 (3-53)||(19206056-19206108)
chr7 (70-115)||(38134334-38134379)
chr7 (5-58)||(40656996-40657049)
chr7 (5-53)||(11072306-11072354)
chr7 (64-112)||(22868116-22868164)
chr7 (43-99)||(33994260-33994316)
chr7 (59-99)||(43250068-43250108)
[»] chr8 (36 HSPs)
chr8 (4-115)||(36450693-36450806)
chr8 (43-99)||(29510248-29510304)
chr8 (4-112)||(20679337-20679447)
chr8 (4-99)||(14134706-14134803)
chr8 (1-99)||(40332195-40332295)
chr8 (2-99)||(3025556-3025655)
chr8 (3-99)||(37283770-37283863)
chr8 (1-58)||(12606825-12606884)
chr8 (40-99)||(8293870-8293929)
chr8 (1-52)||(29776040-29776091)
chr8 (60-114)||(38487157-38487211)
chr8 (40-98)||(44462151-44462209)
chr8 (40-98)||(44469684-44469742)
chr8 (49-114)||(8343381-8343446)
chr8 (5-99)||(31109473-31109569)
chr8 (47-95)||(2035801-2035848)
chr8 (43-99)||(5813640-5813696)
chr8 (42-114)||(9945299-9945371)
chr8 (43-115)||(22652035-22652107)
chr8 (55-99)||(22943304-22943348)
chr8 (42-114)||(28819249-28819321)
chr8 (40-115)||(3951475-3951550)
chr8 (37-99)||(17751697-17751760)
chr8 (37-99)||(17760684-17760747)
chr8 (60-99)||(40064027-40064066)
chr8 (4-99)||(926743-926840)
chr8 (3-114)||(8342978-8343086)
chr8 (43-92)||(14513130-14513180)
chr8 (72-114)||(16641909-16641951)
chr8 (3-41)||(29510319-29510357)
chr8 (5-92)||(31557005-31557093)
chr8 (4-53)||(24017441-24017490)
chr8 (5-41)||(4673440-4673476)
chr8 (1-58)||(13844592-13844651)
chr8 (43-98)||(14659651-14659707)
chr8 (43-99)||(29447503-29447559)
[»] chr6 (32 HSPs)
chr6 (4-99)||(34595141-34595238)
chr6 (3-99)||(28152105-28152202)
chr6 (43-99)||(9107314-9107370)
chr6 (4-99)||(16833315-16833412)
chr6 (3-114)||(28715301-28715414)
chr6 (5-58)||(31579223-31579276)
chr6 (3-97)||(1191660-1191753)
chr6 (4-99)||(8389423-8389524)
chr6 (4-99)||(8776923-8777025)
chr6 (1-52)||(8805576-8805627)
chr6 (3-114)||(24645486-24645600)
chr6 (3-98)||(7265549-7265646)
chr6 (3-90)||(9658885-9658974)
chr6 (65-99)||(31959220-31959254)
chr6 (1-42)||(7723264-7723305)
chr6 (1-42)||(7996392-7996433)
chr6 (1-42)||(8022368-8022409)
chr6 (43-99)||(8365463-8365519)
chr6 (1-114)||(13364645-13364760)
chr6 (1-53)||(9025495-9025549)
chr6 (43-94)||(16766756-16766807)
chr6 (3-99)||(17841544-17841642)
chr6 (4-95)||(12627536-12627629)
chr6 (3-93)||(19040358-19040450)
chr6 (4-53)||(34290080-34290129)
chr6 (3-99)||(4877948-4878046)
chr6 (3-120)||(7377985-7378104)
chr6 (43-99)||(10339069-10339125)
chr6 (1-58)||(21924931-21924990)
chr6 (43-99)||(32978854-32978910)
chr6 (1-114)||(33001229-33001344)
chr6 (5-53)||(34447361-34447409)
[»] chr5 (30 HSPs)
chr5 (3-99)||(21191011-21191109)
chr5 (6-109)||(26312778-26312883)
chr5 (5-114)||(32630675-32630786)
chr5 (3-115)||(21576684-21576798)
chr5 (3-114)||(42893366-42893479)
chr5 (3-97)||(30502345-30502441)
chr5 (3-97)||(30542688-30542784)
chr5 (5-114)||(28588614-28588725)
chr5 (66-114)||(38464313-38464361)
chr5 (5-112)||(7997108-7997217)
chr5 (3-68)||(12927660-12927727)
chr5 (43-99)||(15382533-15382589)
chr5 (43-98)||(7677764-7677819)
chr5 (64-99)||(17088360-17088395)
chr5 (2-82)||(23012380-23012462)
chr5 (5-44)||(34276880-34276919)
chr5 (40-99)||(39268553-39268612)
chr5 (7-95)||(43564891-43564981)
chr5 (61-91)||(21137759-21137789)
chr5 (43-97)||(21542089-21542143)
chr5 (3-52)||(38816698-38816748)
chr5 (43-115)||(2419914-2419987)
chr5 (3-53)||(3966509-3966561)
chr5 (43-92)||(21522809-21522858)
chr5 (43-92)||(21533375-21533424)
chr5 (78-115)||(42469309-42469346)
chr5 (1-112)||(18421779-18421896)
chr5 (2-99)||(21194078-21194177)
chr5 (49-97)||(30098391-30098439)
chr5 (43-99)||(39698600-39698656)
[»] scaffold0022 (1 HSPs)
scaffold0022 (5-114)||(90851-90962)
[»] scaffold0053 (1 HSPs)
scaffold0053 (3-99)||(8804-8902)
[»] scaffold0050 (1 HSPs)
scaffold0050 (5-99)||(70286-70382)
[»] scaffold0361 (1 HSPs)
scaffold0361 (4-114)||(14537-14646)
[»] scaffold0697 (1 HSPs)
scaffold0697 (5-75)||(1652-1724)
[»] scaffold0086 (1 HSPs)
scaffold0086 (43-99)||(2987-3043)
[»] scaffold0044 (1 HSPs)
scaffold0044 (43-83)||(53239-53279)
[»] scaffold0019 (1 HSPs)
scaffold0019 (43-99)||(71784-71840)
[»] scaffold0003 (2 HSPs)
scaffold0003 (43-95)||(241653-241705)
scaffold0003 (63-114)||(236914-236965)
[»] scaffold0128 (1 HSPs)
scaffold0128 (65-99)||(32774-32808)
[»] scaffold0024 (1 HSPs)
scaffold0024 (5-42)||(68256-68293)
[»] scaffold0512 (1 HSPs)
scaffold0512 (43-115)||(4975-5047)
[»] scaffold0154 (1 HSPs)
scaffold0154 (43-99)||(13472-13528)
[»] scaffold0008 (1 HSPs)
scaffold0008 (43-99)||(263316-263372)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 1327984 - 1328202
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||            || ||    
T  1327984 gctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcaaacatgacgcttgtccgacaccgggacacac------------gtgta 1328071  T
Q  103 tatgcttcatagcatatatgttttcttcttttaccaagtatatatataacaaaatatgcatttcatgttacaaatcatgaaatataagaatttcatttta 202  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1328072 tgtgcttcatagcatatatgttttcttcttttaccaagtatatatataacaaaatatgcatttcatgttacaaatcatgaaatataagaatttcatttta 1328171  T
Q  203 tatagttcaaagtaaaatgtgctagaattat 233  Q
    |||||||||||||||||||||||||||||||    
T  1328172 tatagttcaaagtaaaatgtgctagaattat 1328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 18841065 - 18840968
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||| ||||| | | |||| ||| ||||||   |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  18841065 ctaataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagt 18840968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 2438772 - 2438674
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| | ||||||| | |||||||| ||||||   ||||||||||| |||| ||| | |||||||||||||||||| |||||||||||||||    
T  2438772 gctaataatttcaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagt 2438674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 37411297 - 37411199
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||||||| | |||||||| | |||||  |||||| ||||  ||| |||||||||||||||| ||||||| |||| ||||||||||    
T  37411297 gctaataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccgaggagt 37411199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 15972881 - 15972972
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccga 94  Q
    ||||||||||| ||||| | | |||||||| ||||||   ||||||||||| |||| ||| |||||||||| ||||||||||||||||||||    
T  15972881 taataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccga 15972972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 37419802 - 37419858
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagt 37419858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21782873 - 21782821
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||||||||||||||| | |||||||| |||||||||| |||||||    
T  21782873 ctgctaataatttgagaaaatcacataattcagtgtaattatgtgccggtgtc 21782821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 5367199 - 5367289
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatcc 92  Q
    ||||||||||||| |||||| | |||||||| |||||||  ||||||||||| |||| ||| | | |||||| ||||||||| ||||||||    
T  5367199 ctaataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatcc 5367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 37558983 - 37559081
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||  ||||||| | |||||| | ||||||   ||||||||||| ||| |||| ||||||||||||||| |||| | |||||||||||||    
T  37558983 gctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagt 37559081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 2415325 - 2415434
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    ||||||||||||||||| ||| |||| ||| ||| |||  |||| ||||| ||||| ||| | |||||||||||| |||||   ||||||||||||||||    
T  2415325 taataatttgagaaaattatataattaagtgtaactatatgtgttggtgtgagacacgactcatgtccgacaccgagacacgagtaatccgaggagtata 2415424  T
Q  103 tatgcttcat 112  Q
    | || |||||    
T  2415425 tgtgtttcat 2415434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24009314 - 24009399
Alignment:
Q  15 agaaaatcataaaattcagtataa-ttatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||| ||||| |||| ||| ||||||||||||||| |||| ||| |||||| ||||| ||||||| ||| |||| ||||||    
T  24009314 agaaaatcacaaaatgcagtgtaaattatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagt 24009399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 2331802 - 2331850
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||||||||||| | |||||||| || |||||||||||||||    
T  2331802 taataatttgagaaaatcacataattcagtgtatttatgtgtcggtgtc 2331850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 28596517 - 28596573
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| ||||||||||||  |||||| |||||||||||||||    
T  28596517 gtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagt 28596573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 38117212 - 38117117
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagg 96  Q
    ||||||||||||| ||||||| | | ||| || ||||||   |||| |||||| ||||  || |||||||||||||||||||| ||||||||||||    
T  38117212 gctaataatttgaaaaaatcacatacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgagg 38117117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 26769571 - 26769626
Alignment:
Q  44 tgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||| || |||| ||| |||||||||||| ||||||| |||||||||||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 26769626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 27084318 - 27084389
Alignment:
Q  44 tgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    |||||||||| |||| ||| ||||||| |||||| ||||| ||||||| ||||||| | | |||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatagc 27084389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 4882696 - 4882626
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcata 113  Q
    |||||||||||||||| ||  | |||| | |||| | ||||||||||| |||||||||| |||||||||||    
T  4882696 gtgtcggtgtcagacacgatacatgtcgggcacctgaacacacctaattcgaggagtatctatgcttcata 4882626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 28412358 - 28412404
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtg 51  Q
    ||||||||||| ||||||| | |||||||| ||||||||||||||||    
T  28412358 taataatttgataaaatcacataattcagtgtaattatgtgtcggtg 28412404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 34691858 - 34691801
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    ||||||||||||| ||||||||| |||||||| ||||  |||||||||||||| ||||    
T  34691858 gctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggaca 34691801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 34714270 - 34714213
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    ||||||||||||| ||||||||| |||||||| ||||  |||||||||||||| ||||    
T  34714270 gctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggaca 34714213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 12224271 - 12224327
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||  |||||||||||| ||||||| |||||||| ||||||    
T  12224271 gtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagt 12224327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 18276527 - 18276582
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatta--tgtgtcggtgtcaga 56  Q
    |||||||||||||||||||||   |||||||| ||||||  |||||||||||||||    
T  18276527 gctaataatttgagaaaatcacttaattcagtgtaattatgtgtgtcggtgtcaga 18276582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 19942314 - 19942382
Alignment:
Q  44 tgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcat 112  Q
    |||||||||| |||| | |  ||||| ||||||||||||| ||||||||||||||| |  |||||||||    
T  19942314 tgtcggtgtcggacacggcatgtgtctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 517 - 417
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||| ||||||| |||||||||| ||||||   ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  517 ctgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggag 418  T
Q  99 t 99  Q
    |    
T  417 t 417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 11251983 - 11252095
Alignment:
Q  2 tgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||||||||||||  || |||||||| || ||| |||| ||||||||||||||| |    
T  11251983 tgctaataatttgagaaaatcacataattcagtgtaattatgtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgt 11252082  T
Q  102 atatgcttcatag 114  Q
     | ||||||||||    
T  11252083 ctgtgcttcatag 11252095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 40993374 - 40993275
Alignment:
Q  17 aaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||| | |||||||| |||||||  ||||||||||| |||| ||| | |||||||||||||||||| ||||||||||||||| |  |||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 10954959 - 10955057
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    |||||||||||| ||||||| | |||||||| |||| |   ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||||||||||    
T  10954959 ctaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagta 10955057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45451557 - 45451642
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacaca 84  Q
    ||||||||||||||||||||||| | | |||||||||||  |||||||||||||| |||| ||| | |||||||||||| ||||||    
T  45451557 ctgctaataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacaccgagacaca 45451642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 55401082 - 55401195
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    |||||||||||| ||||||| | |||| ||| ||||||   ||||||||||| |||| ||| |||||||||||||| ||||| ||||||||||||||| |    
T  55401082 ctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgt 55401181  T
Q  102 atatgcttcatagc 115  Q
       |||||||||||    
T  55401182 ccgtgcttcatagc 55401195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 7171513 - 7171620
Alignment:
Q  8 taatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatat 105  Q
    |||||||| ||||||||| ||||| || ||||||   |||| |||||| |||| ||| |||||||||||||| ||||| |||||||| |||||| |||||    
T  7171513 taatttga-aaaatcatataattcggtgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatat 7171611  T
Q  106 gcttcatag 114  Q
    |||||||||    
T  7171612 gcttcatag 7171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 8039284 - 8039338
Alignment:
Q  61 acgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    ||||||||||||| |||||||||||||||||| |||||| | |||||||||||||    
T  8039284 acgcgtgtccgactccgggacacacctaatccaaggagtgtttatgcttcatagc 8039338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 25074861 - 25074919
Alignment:
Q  61 acgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagcatat 119  Q
    ||||||||||||||| ||||||||||||||||||||||| |   |||||||||||||||    
T  25074861 acgcgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatagcatat 25074919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 27277893 - 27277780
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcaga-catgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||||||||| | |||| ||| |||||||||||||||   ||| ||  || ||||||||||| |||||||   ||||||||||||||    
T  27277893 ctgctaataatttgagaaaatcacataatttagtgtaattatgtgtcggtaggagaccacaacacgtgtccgaca-cgggacatgtctaatccgaggagt 27277795  T
Q  100 atatatgcttcatag 114  Q
     ||| ||||||||||    
T  27277794 gtatgtgcttcatag 27277780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 4987291 - 4987235
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||  |||| ||| |||||||||||||||||||| |||||||||||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagt 4987235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 8039835 - 8039764
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||||||| |||||||  | |||||||||||||||||| | |||||||| |||||| | ||||||||||    
T  8039835 gtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcatag 8039764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 8383263 - 8383320
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagaca 58  Q
    ||||||||||||||||||||||| |||||||| |||||||  ||||||||||| ||||    
T  8383263 gctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcggaca 8383320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 12100335 - 12100373
Alignment:
Q  61 acgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  12100335 acgcgtgtccgacaccgggacacacctagtccgaggagt 12100373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 18426956 - 18427053
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgt--gtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||| | ||||||| | ||||| || ||||||| |  ||||||||| || | ||| |||||||| ||||||||||||||||||| |||||||    
T  18426956 ctaataatttcaaaaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagt 18427053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 21211359 - 21211413
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||||||||||||||| ||||||| ||||||||||||||| | | ||||||||||    
T  21211359 gacgcgtgtccgacactgggacactcctaatccgaggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 24205092 - 24204996
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagaca-tgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||| | | ||| |||| |||||||  |||||| |||| |||| |||||||||||||||||| |||||| |||||| ||||||||    
T  24205092 taataatttgagaaaatgacataatacagtgtaattataagtgtcg-tgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagt 24204996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 28918007 - 28918107
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtca--gacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||| ||||||| | |||||||| ||||||   |||||||||||   |||| ||| |||||||||||| ||||||| |||||||| |||||    
T  28918007 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggag 28918106  T
Q  99 t 99  Q
    |    
T  28918107 t 28918107  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 17005620 - 17005548
Alignment:
Q  42 tgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||| |||||||||||| || |||||| |||||| ||||||  |||||||||||||| | | ||||||||||    
T  17005620 tgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttcatag 17005548  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 20503474 - 20503569
Alignment:
Q  6 aataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||| ||||| | | |||||||| ||||||   ||||||||||  |||| ||| | |||| ||||||||||||| |||||||||||||||    
T  20503474 aataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagt 20503569  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 3618887 - 3618942
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagaca 58  Q
    |||||||||||||||||||   | |||||||  |||||||||||||||||||||||    
T  3618887 gctaataatttgagaaaattccataattcagcgtaattatgtgtcggtgtcagaca 3618942  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 27505305 - 27505372
Alignment:
Q  49 gtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagca 116  Q
    ||||| |||| ||| |||||||||||||||||||  ||||||||||||||| |   ||||||||||||    
T  27505305 gtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatagca 27505372  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 35222983 - 35223042
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||| |||||||| |||||| ||||| ||||||| | | |||||||||||    
T  35222983 tatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagt 35223042  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 40052381 - 40052416
Alignment:
Q  64 cgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||| |||||||||||||||    
T  40052381 cgtgtccgacaccgggacacgcctaatccgaggagt 40052416  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 52369852 - 52369891
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  52369852 gacgcgtgtccaacaccgggacacacctattccgaggagt 52369891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 8789599 - 8789503
Alignment:
Q  7 ataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcg--tgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||| | ||||| || |||||||  ||||||||||| |||| ||| |   |||| ||||||| ||||| |||||||||||||||    
T  8789599 ataatttgagaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagt 8789503  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 16789634 - 16789584
Alignment:
Q  65 gtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    |||||||||| ||||||||||||||||| |||||| |  ||||||||||||    
T  16789634 gtgtccgacaacgggacacacctaatcctaggagtgtccatgcttcatagc 16789584  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 34185101 - 34185067
Alignment:
Q  65 gtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||||| |||||||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagt 34185067  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 3164021 - 3163964
Alignment:
Q  64 cgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagcatatat 121  Q
    |||||||||||||| ||||| |||||| |||||||| |  ||||||||||| ||||||    
T  3164021 cgtgtccgacaccgagacacgcctaattcgaggagtgtccatgcttcatagtatatat 3163964  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 3730149 - 3730108
Alignment:
Q  73 caccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  3730149 caccgggacacacctaatccgaggagtgtccatgcttcatag 3730108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 8412997 - 8412948
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||||||||| || | |||||||| |||||||||||| |||||    
T  8412997 ctaataatttgagaaaaacacataattcagtttaattatgtgtccgtgtc 8412948  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 23657762 - 23657838
Alignment:
Q  20 atcataaaattcagtataattatg--tgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccga 94  Q
    |||||| |||||||| |||||||   | |||||||| ||||||||   ||||||| |||||||||||||||||||||    
T  23657762 atcatataattcagtgtaattataaatatcggtgtcggacatgacatttgtccgataccgggacacacctaatccga 23657838  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 26492258 - 26492162
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatt--atgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    ||||||||||||| ||||||||| |||||||| |||||  | || |||||||| |||| ||| | |||| ||||||  |||||  ||||||||||||    
T  26492258 gctaataatttgaaaaaatcatacaattcagtgtaattacaagtatcggtgtcggacacgacacatgtctgacaccaagacacgtctaatccgagga 26492162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 20691327 - 20691382
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    ||||||||||||||||| | | |||||||| ||||  |||||||||||||||||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagaca 20691382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 41961650 - 41961598
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    |||||||| || |||| ||| |||||||||||| ||||||| |||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgag 41961598  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 27966052 - 27965939
Alignment:
Q  2 tgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    |||||| |||||||||||||||| ||||||||| ||||||| |||| |||||||||| | | |||| | ||||||||||||| ||||||||||||||| |    
T  27966052 tgctaacaatttgagaaaatcattaaattcagtgtaattatatgtccgtgtcagacacgcctcgtgcctgacaccgggacacgcctaatccgaggagtgt 27965953  T
Q  102 atatgcttcatagc 115  Q
      ||||||||||||    
T  27965952 ccatgcttcatagc 27965939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 42359501 - 42359404
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||| ||||||| |||||||||| ||||||   ||||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||    
T  42359501 ctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagt 42359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 18190160 - 18190048
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    |||||||||||| ||||| | | |||||||| ||||||   |||||| |||||||||  || |||||||||||||||||||||||||||||||||||| |    
T  18190160 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgt 18190061  T
Q  102 atatgcttcatag 114  Q
    ||  |||||||||    
T  18190060 atgcgcttcatag 18190048  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40181875 - 40181975
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgt--cggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||||||||||| | |||||||| ||||||| |||  ||||||| ||||  || ||||||| |||||||||||| ||||||||||||||    
T  40181875 ctgctaataatttgagaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggag 40181974  T
Q  99 t 99  Q
    |    
T  40181975 t 40181975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 40258984 - 40258874
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    ||||||||||| ||||||| | |||||||| ||||||   |||||||||||||||| ||| | ||||||||||| |||||| ||||||||||||||| |     
T  40258984 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtc 40258885  T
Q  103 tatgcttcata 113  Q
     ||||||||||    
T  40258884 catgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 5898319 - 5898221
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtg--tcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||| ||| ||||||| | |||||||| ||||||| ||  ||||||||||||| ||| ||||||| ||||||||||||  ||||||||||||||    
T  5898319 gctaataatctgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagt 5898221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 37598839 - 37598935
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||| ||||||| ||| |||||| |||||||  ||||||||||| |||| ||| |||||||||||  ||||||| |||||||||||||||    
T  37598839 ctaataatttgaaaaaatcacaaa-ttcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagt 37598935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 1486762 - 1486646
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtca-----gacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    ||||||||||||| ||||||| | |||||||| |||||||  |||||||||||      |||| ||| |||||||||||||||||||| |||||||||||    
T  1486762 gctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgag 1486663  T
Q  96 gagtatatatgcttcat 112  Q
    |||| | | ||||||||    
T  1486662 gagtgtctgtgcttcat 1486646  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25452203 - 25452146
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagaca 58  Q
    ||||||||||||||||||||||  | |||||||| |||||||||||||||||||||||    
T  25452203 ctgctaataatttgagaaaatctcataattcagtgtaattatgtgtcggtgtcagaca 25452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 38076025 - 38075909
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    |||||||||||||||| |||||| | || ||||| ||||  |||||||||||||| ||||| || | ||| ||||||||||||||| ||||||  |||||    
T  38076025 ctgctaataatttgagtaaatcacataagtcagtgtaatcatatgtgtcggtgtcggacatcgatgtgtgaccgacaccgggacacgcctaatttgagga 38075926  T
Q  98 gtatatatgcttcatag 114  Q
    || || |||||||||||    
T  38075925 gtgtacatgcttcatag 38075909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 43492542 - 43492434
Alignment:
Q  8 taatttgagaaaatcataaaattcagtataattatgtgt--cggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatat 105  Q
    ||||||||||||||||   ||||| || |||||||||||  ||||||||||||  || | ||||||||||||| |||| |||||||||| ||| |||| |    
T  43492542 taatttgagaaaatcacgtaattcggtgtaattatgtgtgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatccgaagagcatatgt 43492443  T
Q  106 gcttcatag 114  Q
    |||||||||    
T  43492442 gcttcatag 43492434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 2896174 - 2896083
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtata--attatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatcc 92  Q
    ||||||||||||||||||||| | |||||||| ||    ||| ||||||||||||||| |||  |||||||| |||||||||||||||||||    
T  2896174 gctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgtcagacacgacatgtgtccgagaccgggacacacctaatcc 2896083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 46348436 - 46348341
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagg 96  Q
    ||||||||||||| ||||||||| |||| ||| ||||||   ||||||||||| |||| ||| |||||||||||||| ||||| ||| ||||||||    
T  46348436 gctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgagg 46348341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 9828103 - 9828159
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||| |||||||||| ||| ||||||||||||||||||||  ||||||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagt 9828159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 38078714 - 38078595
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||||| | |||||| | ||||||   ||||||||||| |||| ||| | ||| | ||||| |||||| ||||||||||||||||    
T  38078714 gctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagta 38078615  T
Q  101 tatatgcttcatagcatata 120  Q
    |   |||||||||| |||||    
T  38078614 ttcgtgcttcatagaatata 38078595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 22515940 - 22515842
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| ||||||| | |||| ||| ||||||   ||||||||||| |||| ||| | | |||||||||| ||||| |||||||||||||||    
T  22515940 gctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagt 22515842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 22794129 - 22794017
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagaca-tgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    ||||||||||| ||||| | | ||| |||| |||||||  |||||| |||| |||| |||||| |||||||| |||||||||||||||| |||||||| |    
T  22794129 taataatttgaaaaaatgacataatacagtgtaattataggtgtcg-tgtccgacactgacgcatgtccgactccgggacacacctaattcgaggagtgt 22794031  T
Q  102 atatgcttcatagc 115  Q
    |  |||||||||||    
T  22794030 acgtgcttcatagc 22794017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 40917808 - 40917862
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    ||||||||||  |||| ||| |||||||||||||||||||| |||||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgagga 40917862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 51410031 - 51410144
Alignment:
Q  4 ctaataatttgagaaaa-tcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    |||||||||||| |||| ||| | |||||||| ||||||   ||||||||||| |||| ||| ||| |||||||||| ||||| |||||||| |||||||    
T  51410031 ctaataatttgaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagta 51410130  T
Q  101 tatatgcttcatag 114  Q
    |   ||||||||||    
T  51410131 ttcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 1815277 - 1815361
Alignment:
Q  17 aaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||| | |||||||| ||||||   ||||||||||| |||| ||| | |||||||||||||||||| ||||||| |||||||    
T  1815277 aaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagt 1815361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 21530697 - 21530769
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacac 75  Q
    ||||||||||||||||||||| ||||  ||||||||||  ||||||||||| |||| ||| | ||||||||||    
T  21530697 taataatttgagaaaatcatataatttggtataattataagtgtcggtgtcggacacgacacatgtccgacac 21530769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 18337338 - 18337449
Alignment:
Q  6 aataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatat 103  Q
    |||||||||| ||||||| | |||||||| ||||||   ||||||||||| ||||  || |||||||||||| ||||||  ||| ||||||||||| |      
T  18337338 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtcc 18337437  T
Q  104 atgcttcatagc 115  Q
     |||||||||||    
T  18337438 gtgcttcatagc 18337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 20157403 - 20157284
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtca-----gacat-gacgcgtgtccgacaccgggacacacctaatccga 94  Q
    ||||||||| ||||||||||| | |||||||| ||||  ||||||||||||||      ||||  |||||||||||||||||| ||||||||||||  ||    
T  20157403 gctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtccgacaccgacgcgtgtccgacaccgagacacacctaatttga 20157304  T
Q  95 ggagtatatatgcttcatag 114  Q
    |||||||   ||||||||||    
T  20157303 ggagtatccgtgcttcatag 20157284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 33202956 - 33203020
Alignment:
Q  48 ggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcat 112  Q
    ||||||||||| ||  | | |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  33202956 ggtgtcagacacgatacatatccgacaccgtgacacgcctaatccgaggagtatatgtgcttcat 33203020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 11605988 - 11605898
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatt--atgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatc 91  Q
    ||||||||||||| ||||||||| ||||||||  ||||  |||||| ||| ||||| ||||  | |||| |||||||| ||||||||||||    
T  11605988 gctaataatttgaaaaaatcatataattcagtgaaattacatgtgttggtatcagatatgatacatgtctgacaccggaacacacctaatc 11605898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 16297287 - 16297236
Alignment:
Q  48 ggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||| |||| |||| |||||||||||| |||||| |||||||||||||||    
T  16297287 ggtgtcggacacgacgtgtgtccgacaccaggacacgcctaatccgaggagt 16297236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 19562605 - 19562570
Alignment:
Q  64 cgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  19562605 cgtgtccgacacagggacacacctaatccgaggagt 19562570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 36878467 - 36878541
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacac 75  Q
    ||||||||||||||||||||| | |||||||| |||||||  ||||||||||| |||| ||  | ||||||||||    
T  36878467 gctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacac 36878541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 52903257 - 52903334
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacac 83  Q
    ||||||||| | ||||||||| |||||||| |||||||  ||||||||||| ||||   || |||||||||||||||||||    
T  52903257 taataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcggaca---cgtgtgtccgacaccgggacac 52903334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 19637813 - 19637887
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||||||||||||| |||| ||  | | |||||||||||||| | ||||||||||||||||| | ||| ||||||    
T  19637813 tatgtgtcggtgtcggacacgatacatatccgacaccgggacgcccctaatccgaggagtatttgtgcatcatag 19637887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 2288218 - 2288165
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagaca 58  Q
    ||||||||| ||||||||| | |||||| | |||||||||||||||||| ||||    
T  2288218 taataatttaagaaaatcacataattcaatgtaattatgtgtcggtgtcggaca 2288165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 15323231 - 15323272
Alignment:
Q  58 atgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||| ||||||||||||||  ||||||||||||||||||||    
T  15323231 atgacacgtgtccgacaccgaaacacacctaatccgaggagt 15323272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 28674808 - 28674896
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatc 91  Q
    ||||||||||||||||| | | |||||||||||||  ||| ||| ||||||||||| ||| | ||||| |||| | ||||| |||||||    
T  28674808 taataatttgagaaaattacataattcagtataattatatatgttggtgtcagacacgacacttgtccaacactgagacacgcctaatc 28674896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 38503326 - 38503378
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtc 53  Q
    ||||||||||||||||||||||| | |||||| ||||  ||||||||||||||    
T  38503326 gctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgtc 38503378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 46940800 - 46940763
Alignment:
Q  62 cgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  46940800 cgcgtgtccgacaccggaacacgcctaatccgaggagt 46940763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 2784568 - 2784651
Alignment:
Q  9 aatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaat 90  Q
    ||||| ||||||||| | |||| |||||||||||  ||||||||||||||||  ||| || ||||||||  |||||||| ||||    
T  2784568 aatttaagaaaatcacataattgagtataattatatgtgtcggtgtcagacacaacgtgtatccgacactaggacacacttaat 2784651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 9690325 - 9690213
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca-tgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||  ||||||||||| ||  |||||| ||||  |||||||||| ||| | || |||| |||||||||||||||||||| |||||||||  ||||    
T  9690325 gctaataaactgagaaaatcacaa--ttcagtgtaatcatatgtgtcggcgtcggccactgacacgtgtccgacaccgggacacgcctaatccggagagt 9690228  T
Q  100 atatatgcttcatag 114  Q
     | | ||||||||||    
T  9690227 gtttgtgcttcatag 9690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 20629018 - 20629054
Alignment:
Q  68 tccgacaccgggacacacctaatccgaggagtatata 104  Q
    |||| |||||||| |||||||||||||||||||||||    
T  20629018 tccgtcaccgggaaacacctaatccgaggagtatata 20629054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 32461465 - 32461389
Alignment:
Q  42 tgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagcata 118  Q
    |||||||||||| |||| ||| |||||| ||||| ||||||| |||||||| || ||| |   ||||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatagcata 32461389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 32899937 - 32899993
Alignment:
Q  42 tgtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    |||||||||||| ||||  ||||| |||| ||||||||||||| |||||||||||||    
T  32899937 tgtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaatccgagga 32899993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 47989556 - 47989612
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| | |||| |||| |||||||| |||||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagt 47989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 23293039 - 23292941
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| ||||||| | |||||||||||||||   ||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||    
T  23293039 gctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagt 23292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 9996849 - 9996936
Alignment:
Q  6 aataatttgagaaaatcataaaattcagtataattatgtgtc--ggtgtcagacatgacgcgtgtccgacaccgggacacacctaatc 91  Q
    |||||||||||||||||| | |||||||||||||||| ||||  |||||||||||| || |||||||||||| || ||||||||||||    
T  9996849 aataatttgagaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacctaatc 9996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 21945509 - 21945618
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||| | | |||||||| ||||||   ||||||||||| |||||||| | ||||||||||||  |||| |||||||||||||||     
T  21945509 gctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgaggagtg 21945608  T
Q  101 tatatgcttc 110  Q
    | ||||||||    
T  21945609 tctatgcttc 21945618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 53381602 - 53381545
Alignment:
Q  43 gtgtcggtgtcagaca-tgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  53381602 gtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagt 53381545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 56257937 - 56257989
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  56257937 ctgctaataatttgagaaaatcatataattcagtgtaattatgtgtctgtgtc 56257989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 8423771 - 8423681
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatc 91  Q
    ||||||||||||||||||||| | |||||||| |||||||   |||||||||| |||| |||   |||||||||||||||||| |||||||    
T  8423771 gctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatc 8423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10133756 - 10133811
Alignment:
Q  43 gtgtcggtgtcagaca-tgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  10133756 gtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaatctgagga 10133811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 28964301 - 28964188
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||||| | |||||||| ||||||   ||||| ||||| |||| ||| | | |||||||| ||||||| |||||||||||||||     
T  28964301 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtg 28964202  T
Q  101 tatatgcttcatag 114  Q
    |  |||||||||||    
T  28964201 tccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 12895325 - 12895209
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    ||||||||||| ||||||| | ||||  || |||||||  ||||||||||| |||| |||  || ||||||| |||||||| ||||||||||||||| |     
T  12895325 taataatttgaaaaaatcacataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgtt 12895226  T
Q  103 tatgcttcatagcatat 119  Q
      |||||||||||||||    
T  12895225 cgtgcttcatagcatat 12895209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 30982878 - 30982829
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatcc 92  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatcc 30982829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 49431031 - 49431130
Alignment:
Q  3 gctaataatttgagaaaa-tcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| |||| ||| | |||||||| ||||||   ||||||||||| |||| ||| ||||||| |||||||||||| ||| |||||||||||    
T  49431031 gctaataatttgaaaaaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagt 49431130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 944656 - 944617
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  944656 gacgcgtgtccgacaccgggacacacctaatctgaggagt 944617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 56049921 - 56049972
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatc 91  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  56049921 tatgtgtcggtgtcagacatgatacgtatccgacaccaggacacacctaatc 56049972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 3947766 - 3947716
Alignment:
Q  49 gtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagt 3947716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 17425441 - 17425387
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagaca 58  Q
    |||||||||||||||||||  | |||||||| |||||||||||| ||||||||||    
T  17425441 ctaataatttgagaaaatcgcataattcagtgtaattatgtgtctgtgtcagaca 17425387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 19482739 - 19482783
Alignment:
Q  55 gacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||    
T  19482739 gacacgacacgtgtccgacactgggacacacctaatccgaggagt 19482783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 22234890 - 22234838
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    ||||||||||| |||| ||| ||||||||||||| ||||||| ||||||||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgag 22234838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 24343515 - 24343617
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat-------gtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgagg 96  Q
    ||||||||||||||||| | | |||||||| |||||||       ||||||||||| ||||  |||||||||||||||||||||||| |||| || ||||    
T  24343515 taataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattctgagg 24343614  T
Q  97 agt 99  Q
    |||    
T  24343615 agt 24343617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35161040 - 35161135
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccga 94  Q
    |||||| |||||  ||||||||| | |||||||| |||||||  || || | ||| |||| ||| ||||||||||||||| |||||||||||||||    
T  35161040 ctgctactaattcaagaaaatcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccga 35161135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 2362028 - 2361938
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatc 91  Q
    ||||||||||||| ||||| | | |||| ||| ||||||   ||||||||||| |||| ||| |||||| ||||||| |||||||||||||    
T  2362028 gctaataatttgaaaaaattacataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatc 2361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 29205450 - 29205532
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatt--atgtgtcggtgtcagacatgacgcgtgtccgacaccgggacac 83  Q
    ||||||||||||| ||||||| | |||||||| |||||  | ||||||||||  |||| ||| | ||||||||||||||||||    
T  29205450 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 30103406 - 30103297
Alignment:
Q  6 aataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatat 103  Q
    |||||||||||||||||| | |||| ||| ||||  ||||||||||||||| ||| |||   |||| |||| | ||||||| |||||||||||||| | |    
T  30103406 aataatttgagaaaatcacataatt-agtgtaatcatatgtgtcggtgtcaaacacgacatatgtctgacatcaggacacatctaatccgaggagtgtct 30103308  T
Q  104 atgcttcatag 114  Q
     ||||||||||    
T  30103307 ctgcttcatag 30103297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 16184823 - 16184873
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||||||||||||| | ||||||||  ||||||||||| |||||    
T  16184823 gctaataatttgagaaaatcacacaattcagtgaaattatgtgtctgtgtc 16184873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 17876231 - 17876285
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||| ||||||||||| ||||||||||||||| |||||| | | ||||||||||    
T  17876231 gacgcttgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 34306815 - 34306761
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    ||||||||||| |||| ||| |||||||||||||| ||||| ||||||| |||||    
T  34306815 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgagga 34306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 38847065 - 38846968
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatt--atgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||| |||||||||  ||||||| |||||  | ||||| ||||| || | ||| ||||||||||||| | ||| |||||||| ||||||    
T  38847065 gctaataatttgaaaaaatcatattattcagtgtaattacaagtgtcagtgtcggatacgacacgtgtccgacaccagaacatacctaatctgaggag 38846968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 54580075 - 54580006
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccg 71  Q
    |||||||||||| ||||||| | |||||||| |||||||  ||||||||||| |||| ||| ||||||||    
T  54580075 ctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccg 54580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 4157197 - 4157266
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcat 112  Q
    ||||||||||| |||| ||| | |||||||||||| || ||||||||| |||||||| | | ||||||||    
T  4157197 gtgtcggtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 4157484 - 4157553
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcat 112  Q
    ||||||||||| |||| ||| | |||||||||||| || || |||||| |||||||| | ||||||||||    
T  4157484 gtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgaggagtgtctatgcttcat 4157553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 20179364 - 20179405
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgt 46  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||    
T  20179364 taatagtttaagaaaatcatataattcagtataattatgtgt 20179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 49653024 - 49652975
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    |||||||||| ||||||||| | |||||||||||||||| ||| ||||||    
T  49653024 ctaataatttaagaaaatcagataattcagtataattatatgttggtgtc 49652975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 16184902 - 16184950
Alignment:
Q  66 tgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||||||||| ||||||| ||||||||||||||| | | ||||||||||    
T  16184902 tgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 21345543 - 21345471
Alignment:
Q  44 tgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagca 116  Q
    ||||||||||||||| ||  | | ||| ||||||| |||  ||||||||||||||||| | ||||||||||||    
T  21345543 tgtcggtgtcagacacgatacatatccaacaccggtacatgcctaatccgaggagtatgtgtgcttcatagca 21345471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 28084588 - 28084628
Alignment:
Q  59 tgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||| |||||||||||| ||||||| |||||||||||||||    
T  28084588 tgacacgtgtccgacactgggacacgcctaatccgaggagt 28084628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 32910627 - 32910667
Alignment:
Q  59 tgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  32910627 tgacgcgtgtccgacaccatgacacgcctaatccgaggagt 32910667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 40784029 - 40784057
Alignment:
Q  71 gacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||||||||||||    
T  40784029 gacaccgggacacacctaatccgaggagt 40784057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 32287516 - 32287418
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataa--ttatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||| ||||||||||| | ||||||||  ||   |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  32287516 gctaataatctgagaaaatcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagt 32287418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 26033461 - 26033405
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  26033461 gtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagt 26033405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 598256 - 598328
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||| |   |||||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagc 598328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 26733310 - 26733405
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatta--tgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagg 96  Q
    ||||||||||||| ||||||| | |||||||| ||||||  |||||||||||| |||| ||||| ||||||| || || |||| ||||||||||||    
T  26733310 gctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacacgacgcatgtccgatacgggaacacgcctaatccgagg 26733405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 1401031 - 1401142
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||||||| ||| | |||||||| |||||||  || |||||||| |||| |||   ||||||||| |||||||||||||||| |||||||     
T  1401031 gctaataatttgagaaactcacataattcagtgtaattataagtatcggtgtccgacacgaca--tgtccgacatcgggacacacctaatctgaggagtg 1401128  T
Q  101 tatatgcttcatag 114  Q
    |  |||||||||||    
T  1401129 tccatgcttcatag 1401142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 21880158 - 21880252
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    ||||||||||||||||||| | | |||||||| ||||||   ||||||||||| |||| ||| | ||||||||||| |||||| |||||||||||    
T  21880158 gctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgag 21880252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 5835254 - 5835347
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    |||||| ||||||||||| | | |||||||| |||||||  ||||||||||||||||||||  ||||| || |||||||||| | |||||||||    
T  5835254 ctaatagtttgagaaaataacataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatccgag 5835347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 5938480 - 5938582
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat-------gtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgagg 96  Q
    ||||||||||| ||||| | | ||||||||||||||||       ||||||||||||||||  || |||||||||||||||| |||||||||||| ||||    
T  5938480 taataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaatctgagg 5938579  T
Q  97 agt 99  Q
    |||    
T  5938580 agt 5938582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 24339701 - 24339757
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagt 24339757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 3652337 - 3652250
Alignment:
Q  27 aattcagtataattatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||||| | |||| ||||||||||||||||||  | ||   ||||||||  ||||||||||||||||||| |||||| ||||||||||    
T  3652337 aattcaatgtaatcatgtgtcggtgtcagacacaatgcaaatccgacacttggacacacctaatccgaggggtatatgtgcttcatag 3652250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 20549797 - 20549895
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||||   |||||||| ||||  |||||||||||||| ||||  || | |||||||||  | ||||| |||||||||||||||    
T  20549797 gctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagt 20549895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 27093466 - 27093368
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtg--tcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| ||  ||||||| ||||| |||  |||||||||||  ||||||||||||||||| ||||    
T  27093466 gctaataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagt 27093368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 27184835 - 27184933
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtg--tcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| ||  ||||||| ||||| |||  |||||||||||  ||||||||||||||||| ||||    
T  27184835 gctaataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagt 27184933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 5409836 - 5409786
Alignment:
Q  49 gtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagt 5409786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 21864812 - 21864928
Alignment:
Q  3 gctaataatttgagaaaa--tcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||| ||||  ||||| |||| ||| ||||||   |||||| |||| |||| ||| ||||||||||||||||||||  ||||| |||||||    
T  21864812 gctaataatttgaaaaaaaatcatataatttagtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggag 21864911  T
Q  99 tatatatgcttcatagc 115  Q
    | | | |||||||||||    
T  21864912 tgtctgtgcttcatagc 21864928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 22484031 - 22484104
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgaca 74  Q
    ||||||||||| |||||||   | ||||||||||||||||  |||||||||||||||||||| | |||||||||    
T  22484031 gctaataattttagaaaattgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgaca 22484104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 43027469 - 43027403
Alignment:
Q  49 gtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||| |||| |   |||||||||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatagc 43027403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 7133285 - 7133228
Alignment:
Q  42 tgtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    |||||||||||| ||||  |||||||||||||||| ||||||||||||||| ||||||    
T  7133285 tgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggag 7133228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29787422 - 29787373
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgt 52  Q
    ||||||||||||||||||||| | |||||||| ||||||||||| |||||    
T  29787422 gctaataatttgagaaaatcacataattcagtgtaattatgtgttggtgt 29787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 17852060 - 17852104
Alignment:
Q  55 gacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||    
T  17852060 gacatgacacgtgtccgacaccgagacacacctaattcgaggagt 17852104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 24105748 - 24105800
Alignment:
Q  65 gtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagcat 117  Q
    ||||||||||||||||||| ||||| ||||||||| | | |||||||||||||    
T  24105748 gtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcatagcat 24105800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3721098 - 3721156
Alignment:
Q  2 tgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    |||||||||||||||||||||| | |||| ||||||||  |||||||||||||| ||||    
T  3721098 tgctaataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcggaca 3721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12289118 - 12289165
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcg 48  Q
    ||||||||||||||||||||||| | ||||||||  ||||||||||||    
T  12289118 ctgctaataatttgagaaaatcacataattcagtggaattatgtgtcg 12289165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 15680815 - 15680913
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||  | ||||||| | |||| ||| |||||||  ||||||||||| |||| ||| |||||||||||||| |||||  ||||| ||||||||    
T  15680815 gctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagt 15680913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 30731046 - 30731093
Alignment:
Q  6 aataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    |||||||||||||||||| | |||||||| ||||| ||||||||||||    
T  30731046 aataatttgagaaaatcacataattcagtgtaattgtgtgtcggtgtc 30731093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 7758329 - 7758371
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgt 46  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||    
T  7758329 ctaataattttagaaaattatataattcagtataattatgtgt 7758371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 9757037 - 9756983
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagacat 59  Q
    ||||||||||||||||||| | |||||||| |||||||||||  ||||| |||||    
T  9757037 taataatttgagaaaatcacacaattcagtttaattatgtgttagtgtccgacat 9756983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 12278901 - 12278939
Alignment:
Q  61 acgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  12278901 acgcgtgtctgacaccgggacacacctaatcctaggagt 12278939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 32308179 - 32308249
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcata 113  Q
    ||||||||||  |||| ||| | |||||||||||| |||||| |||||||||||||| |  ||||||||||    
T  32308179 gtgtcggtgttggacacgacacatgtccgacaccgagacacagctaatccgaggagtgttcatgcttcata 32308249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 38804543 - 38804489
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||| ||||||||| ||||||||  ||||||||||||||| ||| ||||||||||    
T  38804543 gacgtgtgtccgacgccgggacatgcctaatccgaggagtgtatgtgcttcatag 38804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 2424620 - 2424661
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgt 44  Q
    ||||||||||||||||||||| | |||||||| |||||||||    
T  2424620 gctaataatttgagaaaatcacataattcagtgtaattatgt 2424661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 19206056 - 19206108
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtc 53  Q
    ||||||||||||||||||||| | |||||| ||||||  ||||||||||||||    
T  19206056 gctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 38134379 - 38134334
Alignment:
Q  70 cgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    ||||| |||||||| ||||||||||||||| ||| |||||||||||    
T  38134379 cgacatcgggacacgcctaatccgaggagtgtatgtgcttcatagc 38134334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 40656996 - 40657049
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagaca 58  Q
    ||||||||| |||||||||   |||||| |||||||||||||| ||||||||||    
T  40656996 taataatttaagaaaatcacttaattcaatataattatgtgtccgtgtcagaca 40657049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 11072306 - 11072354
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||| ||||  ||| |||||| ||||||||||||||||||||    
T  11072306 taataatttgaaaaaaatatataattcaatataattatgtgtcggtgtc 11072354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 22868116 - 22868164
Alignment:
Q  64 cgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcat 112  Q
    |||||| ||||||||||||||| ||||||||||||| |  |||||||||    
T  22868116 cgtgtcagacaccgggacacacataatccgaggagtgtccatgcttcat 22868164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 33994260 - 33994316
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||| ||| | ||||| |||||| ||||| |||||||| ||||||    
T  33994260 gtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagt 33994316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 43250068 - 43250108
Alignment:
Q  59 tgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||| |||||| |||||| ||||||||    
T  43250068 tgacgcgtgtccgacaccaggacacgcctaattcgaggagt 43250108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 36450806 - 36450693
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    |||||||||||| ||||||| | |||||||| ||||||   |||| |||||| |||| ||||||||||||||||| |||||| ||||||||||||||| |    
T  36450806 ctaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgt 36450707  T
Q  102 atatgcttcatagc 115  Q
     | |||||||||||    
T  36450706 ctgtgcttcatagc 36450693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 29510304 - 29510248
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagt 29510248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 20679447 - 20679337
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    |||||||||||||||||||| | | |||||| |||||||  |||||||||||||||   || |||||||||||||||||||| ||| | ||||||||| |    
T  20679447 ctaataatttgagaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgt 20679348  T
Q  102 atatgcttcat 112  Q
      |||||||||    
T  20679347 ccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 14134706 - 14134803
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgt--gtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||| | |||||||| ||||||| |  |||||||||| ||| ||| |||||||| |||| |||||| |||||| ||||||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagt 14134803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40332195 - 40332295
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    |||| |||||||||||||||||| | |||||||| ||||||   ||||||||||  |||| ||| ||||||| |||||||||| | ||||||||||||||    
T  40332195 ctgcaaataatttgagaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggag 40332294  T
Q  99 t 99  Q
    |    
T  40332295 t 40332295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 3025556 - 3025655
Alignment:
Q  2 tgctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||||| | |||||||| |||||||  ||||| ||||| |||| ||| |||||| ||||| | |||||  ||||||||||||||    
T  3025556 tgctaataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagt 3025655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 37283863 - 37283770
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||| ||||||||||| | |||||||| |||||||||||||||||  |||| ||| ||||||    ||||||||||  ||||||||||||||    
T  37283863 gctaataatctgagaaaatcacataattcagtgtaattatgtgtcggtgtgggacacgacacgtgtc---taccgggacacgtctaatccgaggagt 37283770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12606884 - 12606825
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    ||||||||||||||||||||||||| |||||| | ||||  |||||||||||||||||||    
T  12606884 ctgctaataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 8293870 - 8293929
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||| ||||||| | | || |||||| ||||||||||||||||||||||    
T  8293870 tatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccgaggagt 8293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29776040 - 29776091
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgt 52  Q
    |||||||||||||||||||||||   |||||||||||||||| |||||||||    
T  29776040 ctgctaataatttgagaaaatcacgtaattcagtataattatatgtcggtgt 29776091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 38487211 - 38487157
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||||||||||||| |||||||| ||||||||||||| | | ||||||||||    
T  38487211 gacgcgtgtccgacacccggacacacataatccgaggagtgtctgtgcttcatag 38487157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 44462209 - 44462151
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||||||| ||  | ||||||||||||||||||  |||||||||||||    
T  44462209 tatgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccgaggag 44462151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 44469742 - 44469684
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||||||| ||  | ||||||||||||||||||  |||||||||||||    
T  44469742 tatgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccgaggag 44469684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 8343381 - 8343446
Alignment:
Q  49 gtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||||| |||| | | ||||||||||    
T  8343381 gtgtccgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 31109569 - 31109473
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||||| | |||||||| ||| |||  ||||| ||||| ||||||   |||||  ||||| ||||||| |||||||||||||||    
T  31109569 taataatttgagaaaatcaaacaattcagtctaactatatgtgtcagtgtcggacatgtgtcgtgtatgacactgggacacgcctaatccgaggagt 31109473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 2035801 - 2035848
Alignment:
Q  47 cggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  2035801 cggtgtcagacc-gacgcgtgtccgacaccgggagacacctaatccgag 2035848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 5813640 - 5813696
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| |||||||||||||||||||| ||||||  |||||||    
T  5813640 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagt 5813696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 9945299 - 9945371
Alignment:
Q  42 tgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||||||||||||||||  | | ||||||||| ||| || ||| |||||| |||||||| ||||||||||    
T  9945299 tgtgtcggtgtcagacatgatacatatccgacaccaggagacgccttatccgaagagtatatttgcttcatag 9945371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 22652035 - 22652107
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    ||||||||||| |||| |||  |||||||||||||||||||  |||||||||||||| |   |||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatagc 22652107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 22943348 - 22943304
Alignment:
Q  55 gacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||    
T  22943348 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagt 22943304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 28819249 - 28819321
Alignment:
Q  42 tgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||||||||||||| ||   || ||| ||||||| ||||  |||||||||||||||||| ||||||||||    
T  28819249 tgtgtcggtgtcagacacgatatgtatccaacaccggaacacggctaatccgaggagtatatgtgcttcatag 28819321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 3951550 - 3951475
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    ||||||||||||||||||| ||| |||||| ||||| || |||| |||||||| |||||| |   |||||||||||    
T  3951550 tatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatagc 3951475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 17751697 - 17751760
Alignment:
Q  37 aattatgtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||| ||||  ||||| |  ||||||||||||||| |||||||||||||||    
T  17751697 aattatgtgtcggtgtcggacacagacgcatagccgacaccgggacacgcctaatccgaggagt 17751760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 17760684 - 17760747
Alignment:
Q  37 aattatgtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||| ||||  ||||| |  ||||||||||||||| |||||||||||||||    
T  17760684 aattatgtgtcggtgtcggacacagacgcatagccgacaccgggacacgcctaatccgaggagt 17760747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 40064027 - 40064066
Alignment:
Q  60 gacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  40064027 gacgtgtgtccgacaccgggacacatctaatccgaggagt 40064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 926840 - 926743
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||  |   |||||| |||||||  ||||||||||| |||  ||| |||||||||||||||||||  | | |||||||||||    
T  926840 ctaataatttgagaaaatctcattgttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagt 926743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 8342978 - 8343086
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||||| | |||| ||| ||||||   |||||||||||  |||||     |||||||||||||||||| |||||||||| ||||     
T  8342978 gctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtacatg-----tgtccgacaccgggacacgcctaatccgaagagtg 8343072  T
Q  101 tatatgcttcatag 114  Q
    | | ||||||||||    
T  8343073 tctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 14513180 - 14513130
Alignment:
Q  43 gtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatcc 92  Q
    ||||||||||||||||  ||||| ||||||||||||| |||||||||||||    
T  14513180 gtgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaatcc 14513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 16641951 - 16641909
Alignment:
Q  72 acaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||||||||||||||||||||||||||| | | ||||||||||    
T  16641951 acaccgggacacacctaatccgaggagtgtctgtgcttcatag 16641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 29510357 - 29510319
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatta 41  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  29510357 gctaataatttgaaaaaatcacaaaattcagtataatta 29510319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 31557005 - 31557093
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatcc 92  Q
    ||||||||||| ||||||| | |||||||| ||||||   || ||||||||||||| ||| | ||||||||||| |||||| ||||||||    
T  31557005 taataatttga-aaaatcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatcc 31557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 24017490 - 24017441
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    |||||||||||||| ||||||| |||||| | ||||||||| ||||||||    
T  24017490 ctaataatttgagacaatcatataattcaatgtaattatgtatcggtgtc 24017441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 4673476 - 4673440
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataatta 41  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  4673476 taataatttgaaaaaatcataaaattcagtgtaatta 4673440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13844651 - 13844592
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    ||||||||||||||||||||||| | |||| ||| ||||  |||||||||||||| ||||    
T  13844651 ctgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggaca 13844592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 14659707 - 14659651
Alignment:
Q  43 gtgtcggtgtcagacatga-cgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||||  | ||||||||| |||||| ||||||||||||| ||||||    
T  14659707 gtgtcggtgtcagacaccaacgcgtgtccaacaccgagacacacctaatctgaggag 14659651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 29447503 - 29447559
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||| |||  ||||||||||||||||||   |||||| |||||||    
T  29447503 gtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagt 29447559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 34595141 - 34595238
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||| ||||||| | |||||||| ||||||   ||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||    
T  34595141 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagt 34595238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 28152105 - 28152202
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| ||||||| | |||||||| ||||||   ||||||||||| |||| ||| |||||||||||||||||||  |||||||||||||||    
T  28152105 gctaataatttga-aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagt 28152202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 9107370 - 9107314
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||||    
T  9107370 gtgtcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatccgaggagt 9107314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 16833315 - 16833412
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||| ||||||| | | |||||| ||||||   |||||||||| ||||| ||| || |||||||||| ||||||||| ||||||||||||    
T  16833315 ctaataatttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacaccgaatccgaggagt 16833412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 28715301 - 28715414
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||| | | |||||||| ||||||   ||||||||||| |||| ||| ||||| |||||||||||||| |||||| |||| |||     
T  28715301 gctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtg 28715400  T
Q  101 tatatgcttcatag 114  Q
    ||  ||||||||||    
T  28715401 tacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 31579276 - 31579223
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagaca 58  Q
    ||||||||||||||||||| | |||||||| |||||||||||||||||| ||||    
T  31579276 taataatttgagaaaatcacataattcagtgtaattatgtgtcggtgtcggaca 31579223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 1191753 - 1191660
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataatt--atgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    ||||||||||||| ||| ||| |||||||||| |||||  | |||||| |||  |||| |||||||||||||||||   ||||||||||||||||||    
T  1191753 gctaataatttgaaaaattcacaaaattcagtgtaattacaagtgtcgatgttggacacgacgcgtgtccgacacc---acacacctaatccgagga 1191660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 8389524 - 8389423
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatg------tgtcggtgtcagac-atgacgcgtgtccgacaccgggacacacctaatccgagg 96  Q
    |||||||||| ||||||||||| |||||||| |||||||       |||||||||| ||| |  ||| ||||||||||||||||||||||||||||||||    
T  8389524 ctaataatttaagaaaatcatataattcagtgtaattatagtgtcatgtcggtgtcggaccaacacg-gtgtccgacaccgggacacacctaatccgagg 8389426  T
Q  97 agt 99  Q
    |||    
T  8389425 agt 8389423  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 8777025 - 8776923
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcg-----tgtccgacaccgggacacacctaatccgagg 96  Q
    |||||||||||| ||||||| |||||||||| ||||||   |||| |||||| |||| ||| ||     |||||||||||| ||||||||||||||||||    
T  8777025 ctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacacgacacgacacgtgtccgacaccgagacacacctaatccgagg 8776926  T
Q  97 agt 99  Q
    |||    
T  8776925 agt 8776923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8805627 - 8805576
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgt 52  Q
    ||||||||||||||||||||||| | |||| ||| |||||||||||||||||    
T  8805627 ctgctaataatttgagaaaatcacataatttagtgtaattatgtgtcggtgt 8805576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 24645486 - 24645600
Alignment:
Q  3 gctaataatttgagaaaa-tcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| |||| ||| | ||||||||||| |||   |||||||||||||||| ||| |||||||||||||  |||||  ||||||||| ||||    
T  24645486 gctaataatttgaaaaaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagt 24645585  T
Q  100 atatatgcttcatag 114  Q
     | | ||||||||||    
T  24645586 gtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 7265646 - 7265549
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||||||||| | |||||||| ||||  |||||||||||||| ||||  |  | ||||||||||||| | |  ||||||||||||||    
T  7265646 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggag 7265549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 9658885 - 9658974
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaat 90  Q
    ||||||||||| ||||||||| | |||||||| ||||  ||| ||||||||| ||||| ||| |||||| |||||||| |||| ||||||    
T  9658885 gctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaat 9658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 31959220 - 31959254
Alignment:
Q  65 gtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||||||||||||||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagt 31959254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7723305 - 7723264
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat 42  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  7723305 ctgctaataatttgagaaaatcatataattcagcataattat 7723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7996433 - 7996392
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat 42  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  7996433 ctgctaataatttgagaaaatcatataattcagtgtaattat 7996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8022368 - 8022409
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat 42  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  8022368 ctgctaataatttgagaaaatcatataattcagtgtaattat 8022409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 8365519 - 8365463
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||| || |||| ||| |||||||||||| ||||||| |||||||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 8365463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13364760 - 13364645
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||| ||||||||||||||||||| |||||||| ||||  |||||||||||||  |||| ||  | |||| |||||| ||||||  ||| ||||| |||    
T  13364760 ctgcttataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacacgatacatgtctgacaccaggacacgtctattccgacgag 13364661  T
Q  99 tatatatgcttcatag 114  Q
    | | | ||||||||||    
T  13364660 tgtctgtgcttcatag 13364645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9025549 - 9025495
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtc 53  Q
    ||||||||||||||||||||||| | |||||||| ||||  ||||||||||||||    
T  9025549 ctgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtc 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 16766756 - 16766807
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccga 94  Q
    ||||||||||| ||||  || |||||||||||||||||||| ||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccga 16766807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 17841642 - 17841544
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| ||||||| | |||| ||| ||||||   ||| ||||||| |||| |||  ||||||||||| | ||||| |||||||||||||||    
T  17841642 gctaataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagt 17841544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 12627629 - 12627536
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    |||||||| ||| ||||||| | |||||||| ||||  ||||||||| |||| ||||  || | |||||||||||| ||||| |||||||||||    
T  12627629 ctaataatgtgaaaaaatcacataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccgacaccgagacactcctaatccgag 12627536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 19040358 - 19040450
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccg 93  Q
    ||||||||||||||||||||| | |||||||| ||||  |||||||| ||||| |||| ||| | ||| | ||   |||||||||||||||||    
T  19040358 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacacatgttcaactttgggacacacctaatccg 19040450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 34290129 - 34290080
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||| || ||||| | |||||||| ||||||||||||||||||    
T  34290129 ctaataatttgcgagaatcacataattcagtgtaattatgtgtcggtgtc 34290080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 4877948 - 4878046
Alignment:
Q  3 gctaataatttgagaaaa-tcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| |||| ||| | |||| ||||||||||   ||||||||||| |||| ||| | |||||||||| || |||| |||||||||||||||    
T  4877948 gctaataatttgaaaaaagtcacataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacacagg-acacgcctaatccgaggagt 4878046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 7377985 - 7378104
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||| ||||||||||||||| | |||||| | |||||||  ||||||||||| |||| |||  |  ||||||||||||||||  |||||| ||| |||     
T  7377985 gctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtg 7378084  T
Q  101 tatatgcttcatagcatata 120  Q
    |   |||||||||| |||||    
T  7378085 tccgtgcttcatagaatata 7378104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 10339125 - 10339069
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| | |||||||||| ||||||| ||||||| |||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagt 10339069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21924990 - 21924931
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagaca 58  Q
    |||||||||||||||||| |||| | |||||||| ||||  |||||||||||||| ||||    
T  21924990 ctgctaataatttgagaatatcaaataattcagtgtaattatatgtgtcggtgtcggaca 21924931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 32978910 - 32978854
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| | ||||||||||||||||||  ||||||| ||||||    
T  32978910 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagt 32978854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33001344 - 33001229
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||||||| ||||||| | |||| | | |||||||  ||||||||||| |||| ||| |||||| |||||||  | || |||||||| | |||    
T  33001344 ctgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagag 33001245  T
Q  99 tatatatgcttcatag 114  Q
    | | | ||||||||||    
T  33001244 tgtttgtgcttcatag 33001229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 34447409 - 34447361
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgtgtcggtgtc 53  Q
    ||||||||||| ||||||||| |||| ||| ||||| ||||||||||||    
T  34447409 taataatttgataaaatcatataatttagtgtaattttgtgtcggtgtc 34447361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 21191109 - 21191011
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| ||||||| | |||||||| ||||||   ||||||||||| ||||  || |||||||||| ||||||||| |||||||||||||||    
T  21191109 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagt 21191011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 26312778 - 26312883
Alignment:
Q  6 aataatttgagaaaatcataaaattcagtataattatgtgt--cggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatat 103  Q
    ||||||||||||||||||   |||||||| ||||||| |||  ||||||| |||| ||  |||||| |||||| |||||||||||||||||||||| |||    
T  26312778 aataatttgagaaaatcaattaattcagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgtat 26312877  T
Q  104 atgctt 109  Q
     |||||    
T  26312878 gtgctt 26312883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 32630786 - 32630675
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    ||||||||||||||||| ||| |||||| | |||||||  ||||| ||||| || | ||| |||||||||||  | |||||||||||| |||||||| |     
T  32630786 taataatttgagaaaattatataattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccgacattgagacacacctaattcgaggagtgtc 32630687  T
Q  103 tatgcttcatag 114  Q
    ||||||||||||    
T  32630686 tatgcttcatag 32630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 21576798 - 21576684
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||||| | |||||||| ||||||   |||||| |||| |||| ||| |||||| ||||| ||||||| |||||||||||||||     
T  21576798 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtg 21576699  T
Q  101 tatatgcttcatagc 115  Q
    |   |||||||||||    
T  21576698 tccgtgcttcatagc 21576684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 42893366 - 42893479
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagta 100  Q
    ||||||||||||| ||||||| | ||| |||| ||||||   ||||||||||||||||  || ||||||||||||| |||||| ||||||  |||||||     
T  42893366 gctaataatttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtg 42893465  T
Q  101 tatatgcttcatag 114  Q
    |  |||||||||||    
T  42893466 tccatgcttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 30502441 - 30502345
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    |||||||||||||||||||||   |||||||| |||||||  ||||||||||| |||| ||| | |||||||||| ||||||  |||||||| ||||    
T  30502441 gctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaagga 30502345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 30542784 - 30542688
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    |||||||||||||||||||||   |||||||| |||||||  ||||||||||| |||| ||| | |||||||||| ||||||  |||||||| ||||    
T  30542784 gctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaagga 30542688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 28588725 - 28588614
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    ||||||||||||||||||| | |||||||| |||||||  ||||||||||| |||| ||| | | || |||||| |||||| | |||||||| |||| |     
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtc 28588626  T
Q  103 tatgcttcatag 114  Q
     |||||||||||    
T  28588625 catgcttcatag 28588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 38464361 - 38464313
Alignment:
Q  66 tgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 7997217 - 7997108
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagaca-tgacgcgtgtccgacaccgggacacacctaatccgaggagtat 101  Q
    ||||||||||||||||| ||| ||| |||| |||||||  |||||| |||| |||| |||||||||||||||| | ||||||||||||| |||| ||| |    
T  7997217 taataatttgagaaaatgatataatacagtgtaattataagtgtcg-tgtcggacactgacgcgtgtccgacatcaggacacacctaattcgagaagtgt 7997119  T
Q  102 atatgcttcat 112  Q
     | ||||||||    
T  7997118 ttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 12927660 - 12927727
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgt 68  Q
    ||||||||||||||||||||||| |||| ||| ||||  ||| |||| |||||||||||||| |||||    
T  12927660 gctaataatttgagaaaatcatataatttagtgtaattatatatgtcagtgtcagacatgacacgtgt 12927727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 15382533 - 15382589
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||  |||| ||| | |||||||||||||||||| |||||||||||||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatccgaggagt 15382589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 7677764 - 7677819
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggag 98  Q
    ||||||||||| |||| | | | |||||||||||||||||| ||||||||||||||    
T  7677764 gtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatccgaggag 7677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 17088360 - 17088395
Alignment:
Q  64 cgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||||||| |||||||||||||||    
T  17088360 cgtgtccgacaccgggacacgcctaatccgaggagt 17088395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 23012462 - 23012380
Alignment:
Q  2 tgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggaca 82  Q
    |||||||||||||||||||||||| |||| | | ||||  |||||||||||||  |||| ||| | |||| ||||||||||||    
T  23012462 tgctaataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttggacacgacacatgtctgacaccgggaca 23012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 34276880 - 34276919
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattatgt 44  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  34276880 taataatttaagaaaatcataaaattcagtgtaattatgt 34276919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 39268612 - 39268553
Alignment:
Q  40 tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||  |||| |||  ||||||||||| ||||||| |||||||||||||||    
T  39268612 tatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagt 39268553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 43564891 - 43564981
Alignment:
Q  7 ataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    ||||||||  ||||||| | |||| ||| |||||||  ||||||||||| |||| |||  ||||||||| ||||||||| |||||||||||    
T  43564891 ataatttggaaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgag 43564981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 21137759 - 21137789
Alignment:
Q  61 acgcgtgtccgacaccgggacacacctaatc 91  Q
    |||||||||||||||||||||||||||||||    
T  21137759 acgcgtgtccgacaccgggacacacctaatc 21137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 21542089 - 21542143
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    ||||||||||| |||| ||| |||||||||||||||||||| || ||||| ||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaagga 21542143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 38816748 - 38816698
Alignment:
Q  3 gctaataatttgagaaaatca-taaaattcagtataattatgtgtcggtgt 52  Q
    ||||||||||||||||||||  || | ||||||||||||||||||||||||    
T  38816748 gctaataatttgagaaaatcgctatatttcagtataattatgtgtcggtgt 38816698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 2419914 - 2419987
Alignment:
Q  43 gtgtcggtgtcagacat-gacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    |||| |||||||||||  || ||||||||||| |||||||||||||||||||| |||| |   |||||||||||    
T  2419914 gtgttggtgtcagacaccgatgcgtgtccgaccccgggacacacctaatccgatgagtgtccgtgcttcatagc 2419987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 3966509 - 3966561
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtc 53  Q
    ||||||||||||||||||||| | |||||||| ||||  ||||||||||||||    
T  3966509 gctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtc 3966561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 21522809 - 21522858
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatcc 92  Q
    ||||||||||| |||| ||| |||||||| ||||||||||| ||||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatcc 21522858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 21533375 - 21533424
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatcc 92  Q
    ||||||||||| |||| ||| |||||||| ||||||||||| ||||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatcc 21533424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 42469309 - 42469346
Alignment:
Q  78 ggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  42469309 ggacacacctaatccgaggagtatccatgcttcatagc 42469346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 18421896 - 18421779
Alignment:
Q  1 ctgctaataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggac--acac--ctaatccga 94  Q
    ||||| ||||||||||||||||| | ||| |||| ||||  |||||||||| ||| |||| ||| | |||||| |||||||||  ||||  |||||||||    
T  18421896 ctgctgataatttgagaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtccggcaccgggactgacacgtctaatccga 18421797  T
Q  95 ggagtatatatgcttcat 112  Q
    ||||| | | ||||||||    
T  18421796 ggagtgtctgtgcttcat 18421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 21194177 - 21194078
Alignment:
Q  2 tgctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||| |||||||||||||||| |  ||||||| |||||||  || | |||||  |||| ||| | |||| ||||||||| ||| |||||||||||||||    
T  21194177 tgctagtaatttgagaaaatcacatcattcagtgtaattataggtattggtgttggacacgacacatgtcagacaccggggcacgcctaatccgaggagt 21194078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 30098391 - 30098439
Alignment:
Q  49 gtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgagga 97  Q
    ||||| |||| ||| |||||| |||||| ||||||||||||||||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgagga 30098439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 39698600 - 39698656
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| |||  || |||||||||| ||||| |||||||||||||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagt 39698656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 90851 - 90962
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataat--tatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtata 102  Q
    ||||||||||||||||||||| |||||||| ||||  ||| ||||| |||||||||  || |||||||||||||   |||| |||||||| | |||| ||    
T  90851 taataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgta 90950  T
Q  103 tatgcttcatag 114  Q
    | ||||||||||    
T  90951 tgtgcttcatag 90962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 8804 - 8902
Alignment:
Q  3 gctaataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||| |||||||||  ||| ||| ||||||   ||||||||||| |||| ||| |||||||||||||| ||||| ||||||| |||||||    
T  8804 gctaataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 70286 - 70382
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| ||||| | | |||||||| |||||||  ||||||||||| |||| ||| ||||||||||||| |||||  |||||||||| ||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagt 70382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 14537 - 14646
Alignment:
Q  4 ctaataatttgagaaaatcataaaattcagtataattatgtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatat 103  Q
    |||||||||||| ||||||| | |||||||| ||||||   || |||||| |||| ||| |||||||||||||| ||||| |||||||  |||||| ||     
T  14537 ctaataatttgaaaaaatcacataattcagtgtaattacaagt-ggtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtac 14635  T
Q  104 atgcttcatag 114  Q
     ||||||||||    
T  14636 gtgcttcatag 14646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 1652 - 1724
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat--gtgtcggtgtcagacatgacgcgtgtccgacac 75  Q
    ||||||||||||||||||||| ||||  ||||||||||  ||||||||||| |||| ||| | ||||||||||    
T  1652 taataatttgagaaaatcatataatttggtataattataagtgtcggtgtcggacacgacacatgtccgacac 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 2987 - 3043
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||| ||||||| ||| ||||| ||||||||| |||| |||||||||||||||    
T  2987 gtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagt 3043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 53239 - 53279
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacac 83  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  53239 gtgtcggtgtcggacatgacacgtgtccgacaccgggacac 53279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 71784 - 71840
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| ||||  || ||||||||||||||||||||  ||||||||||||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagt 71840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 241653 - 241705
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgag 95  Q
    |||| |||||| |||| ||| |||||||||||||||||||| |||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgag 241705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 236965 - 236914
Alignment:
Q  63 gcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatag 114  Q
    ||||||| ||||||||||||||||||||| ||||||| | | ||||||||||    
T  236965 gcgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcatag 236914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 32774 - 32808
Alignment:
Q  65 gtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||||||||||||| |||||||||||||    
T  32774 gtgtccgacaccgggacacacataatccgaggagt 32808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 68293 - 68256
Alignment:
Q  5 taataatttgagaaaatcataaaattcagtataattat 42  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  68293 taataatttgagaaaatcatataatttagtataattat 68256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 5047 - 4975
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagtatatatgcttcatagc 115  Q
    ||||||||||| |||| ||| |||||||||||  | ||||  ||||||||||||||| | | |||||||||||    
T  5047 gtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatagc 4975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 13472 - 13528
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    ||||||||||| |||| ||| ||| | ||||| ||||| ||||||||||||||||||    
T  13472 gtgtcggtgtcggacacgacacgtatacgacatcgggatacacctaatccgaggagt 13528  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 263372 - 263316
Alignment:
Q  43 gtgtcggtgtcagacatgacgcgtgtccgacaccgggacacacctaatccgaggagt 99  Q
    |||||||||||||||| ||| ||||| ||| |||  ||||| |||||||||||||||    
T  263372 gtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagt 263316  T

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