View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_10 (Length: 350)
Name: NF9300_low_10
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 28818704 - 28818380
Alignment:
| Q |
16 |
catgtaacatgacatttctcgttaacgtgtcacgttatagtctctaacgatagaagttaacaaagggattacttaaaatgacattttacaattccaagga |
115 |
Q |
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| T |
28818704 |
catgtaacatgacatttctggttaacgtgtcacgttatagtctccaacgatagaagttaacaaagggatcacttaaaatgacattttacaattccaaggg |
28818605 |
T |
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| Q |
116 |
tatatttgccaatttggaaagatcataaactatttggccgatgcatacaatttcgagaaccaattttcctattcactcttcatctaaaatccaaataaag |
215 |
Q |
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| T |
28818604 |
tatatttgccaatttggaaagatcataaactatttggccgatgcatacaatttcgagaaccaattttcctattcactcttcatctaaaatccaaataaag |
28818505 |
T |
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| Q |
216 |
aaagcattctaattttaccttgttttaagaagggtgcaatatcaatggtctggttatcagcaaagaaggatttctctgagtatctcataaaacaaccagc |
315 |
Q |
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| T |
28818504 |
aaagcattctaattttaccttgttttaagaagggtgcaatatcaatggtctggttatcagcaaagaaggatttctctgagtatctcataaaacaaccagc |
28818405 |
T |
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| Q |
316 |
atcaaatgccctaccatcagtatta |
340 |
Q |
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| T |
28818404 |
atcaaatgccctaccatcagtatta |
28818380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 28834168 - 28834089
Alignment:
| Q |
254 |
atatcaatggtctggttatcagcaaagaaggatttctctgagtatctcataaaacaaccagcatcaaatgccctaccatc |
333 |
Q |
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| T |
28834168 |
atatcaatggtctgattatcagcaaaaaagggtgtctctgagtatctcataaaacaccctgcatcatatgctctaccatc |
28834089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 28825289 - 28825209
Alignment:
| Q |
254 |
atatcaatggtctggttatcagcaaagaaggatttctctgagtatctcataaaacaaccagcatcaaatgccctaccatca |
334 |
Q |
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|||||||||||||| ||||||||||| |||| | ||||||| |||||||||||||| || |||||| |||| ||||||||| |
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| T |
28825289 |
atatcaatggtctgattatcagcaaaaaagggtgtctctgaatatctcataaaacaccctgcatcatatgctctaccatca |
28825209 |
T |
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