View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_11 (Length: 325)
Name: NF9300_low_11
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 309
Target Start/End: Original strand, 26514214 - 26514481
Alignment:
| Q |
36 |
aatttatcaggtcttagagccttacttacccctactcataaagttatcatttttggagatggaaatcctaaaggtatatagaaattcagttttaattaat |
135 |
Q |
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| T |
26514214 |
aatttatcaggtcttagagccttacttacccctactaataaagttatcatttttggagatggaaatcccaaaggtatatagaaattcagttttaattaat |
26514313 |
T |
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| Q |
136 |
tgattaagaatataaaaataaaatataacacataacacatattcagattaatttgatttt-tatttgattattaacagctgtttttaacactcacgaaga |
234 |
Q |
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| T |
26514314 |
tgattaagaatataaaaatataatataacacaca-------ttcagattaatttgattttttatttgattattaacagctgtttttaacactcacgaaga |
26514406 |
T |
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| Q |
235 |
tgttgctacttatacaatccaagctattgatgatccaagaaccttgaacaaaattctctatgttagaccccatgc |
309 |
Q |
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| T |
26514407 |
tgttgctacttatacaatccaagctattgatgatccaagaaccttgaacaaaattctctatgttagaccccatgc |
26514481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 26504025 - 26504068
Alignment:
| Q |
260 |
attgatgatccaagaaccttgaacaaaattctctatgttagacc |
303 |
Q |
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| T |
26504025 |
attgatgatccaagaaccttgaacaaaattctctatcttagacc |
26504068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 54638735 - 54638830
Alignment:
| Q |
208 |
aacagctgtttttaacactcacgaagatgttgctacttatacaatccaagctattgatgatccaagaaccttgaacaaaattctctatgttagacc |
303 |
Q |
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| T |
54638735 |
aacagctgtttttaacaaagaagaggatattgctacttatacaatcaaatctgttgatgatccaagaaccttgaacaaaattctgtatattagacc |
54638830 |
T |
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