View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_14 (Length: 314)
Name: NF9300_low_14
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 43260707 - 43260411
Alignment:
| Q |
1 |
tggagcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctttgtagttgaagaaaaaagtattgtaaggt |
100 |
Q |
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| T |
43260707 |
tggagcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctttgtagttgaagaaaaaagtattgtaaggt |
43260608 |
T |
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| Q |
101 |
ggatgttttttgagtaagatttaagaacctagagtatgcctaagtaaaacgttttgatcaagtgtttattatcgcttatgattatgtataatctactttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43260607 |
ggatgttttttgagtaagatttaagaacctagagtatgcctaagtaaaacgttttgatcaagtgtttattatcgcttatgattatttataatctactttc |
43260508 |
T |
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| Q |
201 |
ataattaaagatgaaactattgaacttttttatacaagttattatttgttgttcatacatgtttgaagttaaagacatgtaattatgaaatattttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43260507 |
ataattaaagatgaaactattgaacttttttatacaagttattacttgttgttcatacatgtttgaagttaaagacatgtaattatgaaatattttt |
43260411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 43257102 - 43256841
Alignment:
| Q |
5 |
gcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctttgtagttgaagaaaaaagtattgtaaggtggat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| |
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| T |
43257102 |
gcaaatagacaattgtggtttgcatcaaagcaaagtctttcttacttggatggcaggtaaattcctaagtagttgaacaaaaaactgttgtaaggtggat |
43257003 |
T |
|
| Q |
105 |
gttttttgagtaagatttaagaacctagagtatgcctaagtaaaacgttttgatcaagtgtttattatcgcttatgattatgtataatctactttcataa |
204 |
Q |
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||||| ||||||||||||||||| || |||||||||||||| |||| ||| |||||||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
43257002 |
gttttgtgagtaagatttaagaatcttgagtatgcctaagt-aaacagtttaatcaagtgtttattatcgtttatgattacggataatctactttcatag |
43256904 |
T |
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| Q |
205 |
ttaaagatgaaactattgaacttttttatacaagttattatttgttgttcatacatgtttgaagtt |
270 |
Q |
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||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||| |
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| T |
43256903 |
ttaaagatgaaactattgaacttttctatacaag---ttacttgttgttcatacatgttagaagtt |
43256841 |
T |
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