View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9300_low_17 (Length: 253)

Name: NF9300_low_17

Description: NF9300

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9300_low_17

[»] chr7 (5 HSPs)

Alignment Details

Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 238; E-Value: 1e-132

Query Start/End: Original strand, 8 - 253

Target Start/End: Original strand, 34090487 - 34090732

Alignment:

Q	8	gagaagcagagaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgca	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34090487	gagaagcagagaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgca	34090586	T

Q	108	tgcttgatcaggtgcacacccgttttgagtatctgtgtttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcagtaact	207	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	34090587	tgtttgatcaggtgcacacccgttttgagtatctgtgtttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcaataact	34090686	T

Q	208	gtggctaccaccattaaggaacctctcatttgttccatccaatttc	253	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34090687	gtggctaccaccattaaggaacctctcatttgttccatccaatttc	34090732	T

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Target: chr7; HSP #2

Raw Score: 89; E-Value: 5e-43

Query Start/End: Original strand, 145 - 253

Target Start/End: Original strand, 34093569 - 34093677

Alignment:

Q	145	tttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcagtaactgtggctaccaccattaaggaacctctcatttgttcca	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34093569	tttgattgccaaacacctcctggtgggtttattgcaatttggaaagttaaggatgccataactgtggctaccaccattagggaacctctcatttgttcca	34093668	T

Q	245	tccaatttc	253	Q
		\|\|\| \|\|\|\|\|
T	34093669	tcctatttc	34093677	T

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Target: chr7; HSP #3

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 8 - 101

Target Start/End: Original strand, 34093460 - 34093553

Alignment:

Q	8	gagaagcagagaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagc	101	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34093460	gagaagcagagaaagatatagtacataacagtataaacatttcatatctaagcttttgagtgccatcaccagatgctaaaactgaagtaccagc	34093553	T

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Target: chr7; HSP #4

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 37 - 125

Target Start/End: Original strand, 34096790 - 34096878

Alignment:

Q	37	agtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatcaggtgcaca	125	Q
		\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	34096790	agtataaaaagttcatatctaaatttttggttgctatcaccaaatgctaaaactaaagtactagctttgcatatttgatcatgtgcaca	34096878	T

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Target: chr7; HSP #5

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 67 - 117

Target Start/End: Original strand, 34092660 - 34092710

Alignment:

Q	67	ttgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatca	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	34092660	ttgctatcaccaaatgctagaactaaagtaccagctttgcatatttgatca	34092710	T

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