View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_2 (Length: 437)
Name: NF9300_low_2
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 41930399 - 41930823
Alignment:
| Q |
1 |
tggtggggagaggtcaaatcgttcaaagagatggatattagaataaggaattcaataaaaagacccacttcagtgactaataagaactttcttaaaagta |
100 |
Q |
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|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41930399 |
tggtggtgagaggaaaaattgttcaaagagatggatattagaataaggaattcaataaaaagacccacttcagtgactaataagaactttcttaaaagta |
41930498 |
T |
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| Q |
101 |
tagttttgttcttcatgaaatcataattttctcacaaacatcacatggtgttggaaagatcactaaactgtaaacaaggacaaaaacttacctgtgtaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41930499 |
tagttttgttcttcatgaaatcataattttctcacaaacatcacatggtgttggaaagatcactaaactgtaaacaacgacaaaaacttacctgtgtaca |
41930598 |
T |
|
| Q |
201 |
ctctatcaagcacacggggaacggcacaaaaaatagttggttttaactcagcaatgtcttccatcaacaatttgatatcctgcagccacattgaataaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41930599 |
ctctatcaagcacacggggaacggcacaaaaaatagttggttttaactcagcaatgtcttccatcaacaatttgatatcctgcagccacattgaataaat |
41930698 |
T |
|
| Q |
301 |
aatagtgctgatattaatctcaaatacaaattttgacttacttgatgttaatattaagaaaatccaatatactataatcacatcaagccttcattaagta |
400 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41930699 |
aatagtgctcatattaatctcaaatacaaattttgacttacttgatgttaaatttaagaaaatccaatatactataatcacatcaagccttcattaagta |
41930798 |
T |
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| Q |
401 |
atgaaagatttatcacgtatatatt |
425 |
Q |
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||||||||||||||||||||||||| |
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| T |
41930799 |
atgaaagatttatcacgtatatatt |
41930823 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 2203499 - 2203450
Alignment:
| Q |
196 |
gtacactctatcaagcacacggggaacggcacaaaaaatagttggtttta |
245 |
Q |
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||||||||||||||| |||||||| || ||||| |||||||||||||||| |
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| T |
2203499 |
gtacactctatcaagtacacggggtaccgcacagaaaatagttggtttta |
2203450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 2216116 - 2216060
Alignment:
| Q |
189 |
tacctgtgtacactctatcaagcacacggggaacggcacaaaaaatagttggtttta |
245 |
Q |
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|||||| ||||||||||||||| ||||| || || ||||| |||| ||||||||||| |
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| T |
2216116 |
tacctgagtacactctatcaagtacacgaggtaccgcacagaaaaaagttggtttta |
2216060 |
T |
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