View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_20 (Length: 236)
Name: NF9300_low_20
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 48065131 - 48064918
Alignment:
| Q |
1 |
atgaattgttgcagtttaattgttaatttatttgtgtttctgttatggtgcagataattatcgaagaagagtattcttcaactacgaaaaacgtcttcgc |
100 |
Q |
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| T |
48065131 |
atgaattgttgcagtttaattgttaatttatttgtgtttctgttatggtgcagataattatcgaagaagagtattcttcaactacgaaaaacgtcttcgc |
48065032 |
T |
|
| Q |
101 |
ttgcaaagtcctccagaaaaggtaatcaatcttgtcattatgagtttgtttaatgatcaatcaatagcttaaaaccagcaaattgttaccattgaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48065031 |
ttgcaaagtcctccagaaaaggtaatcaatcttgtcattatgagtttgtttaatgatcaatcaatagcttaaaaccagcaaattgttaccattgaatgtt |
48064932 |
T |
|
| Q |
201 |
ttaatatgacacct |
214 |
Q |
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|||||||||||||| |
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| T |
48064931 |
ttaatatgacacct |
48064918 |
T |
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