View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_24 (Length: 223)
Name: NF9300_low_24
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_24 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0256 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 11215 - 11044
Alignment:
| Q |
16 |
tggtggtcacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgc |
114 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
11215 |
tggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttggcatatggaaatttgtaaaaaaccacgactccgt |
11116 |
T |
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| Q |
115 |
gctcaaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcata |
186 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11115 |
gctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcata |
11044 |
T |
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 48298799 - 48298634
Alignment:
| Q |
23 |
cacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgcgctcaaa |
121 |
Q |
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||||||||||||||| ||||| || ||||| ||||| |||| || ||||||||||||||| || ||||||||||||||||| | ||| ||| ||| || |
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| T |
48298799 |
cacaagggttcttattaatggcgatttccagaaggcctttgacattattgcatctcttgaggtgtggaaatttgtgaaaaatcgtgacaccgtgctagaa |
48298700 |
T |
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| Q |
122 |
atgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatat |
187 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
48298699 |
atgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttaccttctcttcatcatat |
48298634 |
T |
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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 233683 - 233518
Alignment:
| Q |
23 |
cacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgcgctcaaa |
121 |
Q |
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||||||||||||||| |||||||| ||||| ||||| |||| || ||||||||||||||| || ||||||||||||||||| | ||| ||| ||| || |
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| T |
233683 |
cacaagggttcttattaatggagatttccagaaggcctttgacattattgcatctcttgaggtttggaaatttgtgaaaaatcgtgacaccgtgctagaa |
233584 |
T |
|
| Q |
122 |
atgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatat |
187 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||| ||||||| | ||||||||||||| |
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| T |
233583 |
atgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttactttctcttcatcatat |
233518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 21629268 - 21629432
Alignment:
| Q |
21 |
gtcacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgcgctca |
119 |
Q |
| |
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|||||||| ||||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||| || ||||||| ||| |
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| T |
21629268 |
gtcacaagacttcttattaatggagacttcctcaaggcctttgacaatattgcatctctcgatgtatggaaatttgtgaaacactgagactccgtgctag |
21629367 |
T |
|
| Q |
120 |
aaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatat |
187 |
Q |
| |
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||| |||||||||||||||| |||| |||||||||||||||| || |||||| ||||||||||||| |
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|
| T |
21629368 |
aaa---tgaaggacaaaatcaaggaggaggcacttaggacatacctaattaccttctcttcatcatat |
21629432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 7391812 - 7391977
Alignment:
| Q |
23 |
cacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgcgctcaaa |
121 |
Q |
| |
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||||||||||||||| |||||||| ||||| ||||| |||| || ||||||||||||||| || ||||||||||||||||| | ||| ||| ||| || |
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| T |
7391812 |
cacaagggttcttattaatggagatttccagaaggcctttgacattattgcatctcttgacgtctggaaatttgtgaaaaatcgagacgccgtgctagaa |
7391911 |
T |
|
| Q |
122 |
atgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatat |
187 |
Q |
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||||| |||||||||||||| || | |||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
7391912 |
atgcttaaggacaaaatcaaggaagaggcacttaggacatacctatttaccttctcttcatcatat |
7391977 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 16977502 - 16977340
Alignment:
| Q |
24 |
acaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgcgctcaaaa |
122 |
Q |
| |
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|||||| ||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||| | | | | |
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| T |
16977502 |
acaaggcttcttatgaatggggacttgcacaaggcttttgacaatattgcatctcttgacgtatggaaatttgtgaaaaaacgagactccctgttagaga |
16977403 |
T |
|
| Q |
123 |
tgctgaa-ggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatca |
184 |
Q |
| |
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||||||| ||| |||||||| |||| | |||||||||||||| ||||||||||| |||||||| |
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| T |
16977402 |
tgctgaagggaaaaaatcaaggaggagacacttaggacatacctatttacctccccttcatca |
16977340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 16874365 - 16874504
Alignment:
| Q |
16 |
tggtggtcacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctctt-gatgtatggaaatttgtgaaaaaccacgactccg |
113 |
Q |
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|||| ||||||| | |||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||||| || ||| ||| |
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| T |
16874365 |
tggttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacattattgcatctctttgatgtatggaaatttgtgaaaaatcaagacgccg |
16874464 |
T |
|
| Q |
114 |
cgctcaaaatgctgaaggacaaaatcaaagaggtggcact |
153 |
Q |
| |
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||| ||||| |||||||||||| ||| |||| |||||| |
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| T |
16874465 |
tgctggaaatgttgaaggacaaaaccaaggaggaggcact |
16874504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 16580505 - 16580643
Alignment:
| Q |
16 |
tggtggtcacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgc |
114 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| | || ||| |
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|
| T |
16580505 |
tggttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacaatattgcatctcttgatgtatggtaatttgtgaaaaatcgaaacgccgt |
16580604 |
T |
|
| Q |
115 |
gctcaaaatgctgaaggacaaaatcaaagaggtggcact |
153 |
Q |
| |
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||| ||||| |||||||||||| ||| |||| |||||| |
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| T |
16580605 |
gctagaaatgttgaaggacaaaaccaaggaggaggcact |
16580643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 16614875 - 16614737
Alignment:
| Q |
16 |
tggtggtcacaagggttcttatcaatggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgc |
114 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| | || ||| |
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| T |
16614875 |
tggttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacaatattgcatctcttgatgtatggtaatttgtgaaaaatcgaaacgccgt |
16614776 |
T |
|
| Q |
115 |
gctcaaaatgctgaaggacaaaatcaaagaggtggcact |
153 |
Q |
| |
|
||| ||||| |||||||||||| ||| |||| |||||| |
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|
| T |
16614775 |
gctagaaatgttgaaggacaaaaccaaggaggaggcact |
16614737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 16572510 - 16572624
Alignment:
| Q |
40 |
atggagacttccacaaggcttttg-caatattgcatctcttgatgtatggaaatttgtgaaaaaccacgactccgcgctcaaaatgctgaaggacaaaat |
138 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| | || ||| ||| ||||| |||||||||||| |
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|
| T |
16572510 |
atggagaattccacaaggcttttgacattattgcatctcttgatgtatggaaatttgtgaaaaatcgagatgccgtgctagaaatgttgaaggacaaaac |
16572609 |
T |
|
| Q |
139 |
caaagaggtggcact |
153 |
Q |
| |
|
||| |||| |||||| |
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|
| T |
16572610 |
caaggaggaggcact |
16572624 |
T |
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