View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9300_low_25 (Length: 208)
Name: NF9300_low_25
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 27513835 - 27514015
Alignment:
| Q |
9 |
tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtt |
108 |
Q |
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| T |
27513835 |
tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtt |
27513932 |
T |
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| Q |
109 |
tctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttcct |
191 |
Q |
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| T |
27513933 |
tctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttcct |
27514015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
| Q |
33 |
gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga |
128 |
Q |
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| T |
8675040 |
gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga |
8674941 |
T |
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| Q |
129 |
gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggac |
179 |
Q |
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| T |
8674940 |
gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac |
8674890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 39210001 - 39209906
Alignment:
| Q |
9 |
tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagca |
104 |
Q |
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| T |
39210001 |
tcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaatagcagcatcgcgagctttcgacttagca |
39209906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 24037047 - 24037194
Alignment:
| Q |
33 |
gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga |
128 |
Q |
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||||||||| ||||||||||||||| ||||||||| |||| || | || |||||||||||||||||||||| |||||| || |||||| ||| || |
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| T |
24037047 |
gagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcgtgtttctcaagcttcttctgacgcttga |
24037146 |
T |
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| Q |
129 |
gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaag |
176 |
Q |
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|||||||||||||||||||||||||| |||| |||||| ||||||||| |
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| T |
24037147 |
gtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag |
24037194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 39209911 - 39209851
Alignment:
| Q |
131 |
ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttcct |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39209911 |
ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttcct |
39209851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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