View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9300_low_3 (Length: 434)

Name: NF9300_low_3
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9300_low_3
NF9300_low_3
[»] chr8 (1 HSPs)
chr8 (273-339)||(20659408-20659474)
[»] chr7 (2 HSPs)
chr7 (287-397)||(2539003-2539116)
chr7 (290-335)||(30526089-30526134)
[»] chr4 (2 HSPs)
chr4 (287-361)||(15330125-15330202)
chr4 (44-116)||(50313945-50314017)
[»] chr3 (1 HSPs)
chr3 (297-413)||(39255199-39255318)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 20659474 - 20659408
Alignment:
Q  273 ttctttttcctatgtatgctattttatatgcaactatttgagttttatgaatttcgtataatcctat 339  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20659474 ttctttttcctacttatgctattttatatgcatatatttgagttttatgaatttcgtataatcctat 20659408  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 397
Target Start/End: Original strand, 2539003 - 2539116
Alignment:
Q  287 tatgctattttatatgcaactatttgagttttatgaatttcgtataatcct---attaatgtaaggattctatgatttgcgactttacctccacttacga 383  Q
    |||||||||| |||||||  |||||||||||||||||||  ||||||||||   |||||||||| ||||||| ||||| ||||||||| ||| |||||      
T  2539003 tatgctatttaatatgcatatatttgagttttatgaattgtgtataatcctatgattaatgtaatgattctaggatttacgactttacttccccttactg 2539102  T
Q  384 attatacgtgaaat 397  Q
    ||||||||| ||||    
T  2539103 attatacgtaaaat 2539116  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 30526134 - 30526089
Alignment:
Q  290 gctattttatatgcaactatttgagttttatgaatttcgtataatc 335  Q
    |||||||||||||||  |||||||| ||||||||||| ||||||||    
T  30526134 gctattttatatgcatatatttgagatttatgaattttgtataatc 30526089  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 15330125 - 15330202
Alignment:
Q  287 tatgctattttatatgcaactatttgagttttatgaatttcgtataatcct---attaatgtaaggattctatgattt 361  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||   |||||||||| ||||||| |||||    
T  15330125 tatgctattttatatgcatatatttgagttttatgaattttgtataatcctacgattaatgtaacgattctacgattt 15330202  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 50314017 - 50313945
Alignment:
Q  44 tgaacgatcatgactacacctagaatcctaaattagtgaaatcctgtataatcacttccgttaatcgtaaaat 116  Q
    |||| ||||| |||||| || |||||  ||| ||||||||||| |||||||||| ||| ||||||||||||||    
T  50314017 tgaaggatcacgactacgcccagaattgtaatttagtgaaatcgtgtataatcaattctgttaatcgtaaaat 50313945  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 413
Target Start/End: Complemental strand, 39255318 - 39255199
Alignment:
Q  297 tatatgcaactatttgagttttatgaatttcgtataatccta---ttaatgtaaggattctatgatttgcgactttacctccacttacgaattatacgtg 393  Q
    ||||||||  || |||||||||||||||||  ||||||||||   ||||||||| ||||||||||||| ||| |||||  || |||||  |||||| ||     
T  39255318 tatatgcatatacttgagttttatgaattttctataatcctacgattaatgtaacgattctatgatttacgattttactcccccttaccgattataagta 39255219  T
Q  394 aaattccaattttgactacc 413  Q
    |||| || ||||||||||||    
T  39255218 aaatcccgattttgactacc 39255199  T

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