View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9300_low_7 (Length: 401)
Name: NF9300_low_7
Description: NF9300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9300_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 81 - 391
Target Start/End: Complemental strand, 41491317 - 41491007
Alignment:
| Q |
81 |
ttaatgttaactttgttgtgactgttcggcttttcgtgtgtttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41491317 |
ttaatgttaactttgttgtgactgttcggctttttgtgtgtttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagc |
41491218 |
T |
|
| Q |
181 |
agcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagccct |
280 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41491217 |
agcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagccct |
41491118 |
T |
|
| Q |
281 |
tccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41491117 |
tccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttg |
41491018 |
T |
|
| Q |
381 |
ccatgcctatg |
391 |
Q |
| |
|
||||||||||| |
|
|
| T |
41491017 |
ccatgcctatg |
41491007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 116 - 396
Target Start/End: Complemental strand, 23858906 - 23858626
Alignment:
| Q |
116 |
gtgtgtttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaa |
215 |
Q |
| |
|
|||| |||||||||||||||||| || ||||| ||||| ||||||||||| ||||| |||||||||||||||||||| || | ||||| ||||| ||| |
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|
| T |
23858906 |
gtgtttttaggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaa |
23858807 |
T |
|
| Q |
216 |
gttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcc |
315 |
Q |
| |
|
| |||||| |||||||||| | ||||||||||||||||| | |||||||| ||||| || ||||| |||||||| || |||||||||||||||||||| |
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|
| T |
23858806 |
gctgtggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtcattctgggagtccttcaattttcattactgctactaacttttgtcctcc |
23858707 |
T |
|
| Q |
316 |
taactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttgccatgcctatgcttct |
396 |
Q |
| |
|
||| ||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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|
| T |
23858706 |
taattttgctcaagcaagtgataatggtggttggtgtaaccctcctcgtcctcattttgatcttgctatgcctatgtttct |
23858626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 128 - 391
Target Start/End: Complemental strand, 34207920 - 34207657
Alignment:
| Q |
128 |
ggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggttctt |
227 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| || || | |||||||| || | |
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|
| T |
34207920 |
ggagcatgtggttatggaaatctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgt |
34207821 |
T |
|
| Q |
228 |
gttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctca |
327 |
Q |
| |
|
||||||| || |||||| | ||||| ||||| ||| |||| || ||||| || || | || ||||| || |||||||| || || |||||||| |
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|
| T |
34207820 |
gttttgagttaaagtgttccaatgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctca |
34207721 |
T |
|
| Q |
328 |
acctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttgccatgcctatg |
391 |
Q |
| |
|
| | ||||| ||||| ||||||||||||||||| || || |||||||||||||| ||||||||| |
|
|
| T |
34207720 |
agcaagtgataatggaggttggtgtaaccctccacgaccacactttgatcttgctatgcctatg |
34207657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 18301644 - 18301531
Alignment:
| Q |
121 |
tttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgt |
220 |
Q |
| |
|
|||||| || |||||||| ||||||||| | || ||||||||||||||| ||||| || || ||||||||||| | ||||| | ||| |||| ||| |
|
|
| T |
18301644 |
tttaggtggtgcatgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagctgt |
18301545 |
T |
|
| Q |
221 |
ggttcttgttttga |
234 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18301544 |
ggttcttgttttga |
18301531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 32000348 - 32000276
Alignment:
| Q |
123 |
taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagc |
195 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| | |||||| |||||| ||||| |||||| |||||||||| |
|
|
| T |
32000348 |
taggaggtgcatgtggttatggaaatttgtacaatcaaggatatggaacaaacactgcagcactaagcacagc |
32000276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 391
Target Start/End: Complemental strand, 22314230 - 22313997
Alignment:
| Q |
158 |
caaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagc |
257 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||| | ||||||||| | ||||||| | || | |
|
|
| T |
22314230 |
caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac |
22314131 |
T |
|
| Q |
258 |
aatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccc |
357 |
Q |
| |
|
|||||| || |||| | ||| || || || ||||| || || |||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
22314130 |
gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc |
22314031 |
T |
|
| Q |
358 |
tcctcgtcctcactttgatcttgccatgcctatg |
391 |
Q |
| |
|
||| | ||||||||||||||||| ||||||||| |
|
|
| T |
22314030 |
acctagacctcactttgatcttgctatgcctatg |
22313997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 2867233 - 2867144
Alignment:
| Q |
134 |
tgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt |
223 |
Q |
| |
|
||||| ||||||||| | ||||| |||||||||||| || ||||||||||| ||||| ||||||||||| |||||| | ||||||||| |
|
|
| T |
2867233 |
tgtggatatggaaacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggt |
2867144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 45506957 - 45506886
Alignment:
| Q |
305 |
ttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgat |
376 |
Q |
| |
|
|||||||| || |||||||| | |||| ||||||||||||||||||||| || ||| | |||||||||||| |
|
|
| T |
45506957 |
ttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat |
45506886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 45512417 - 45512346
Alignment:
| Q |
305 |
ttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgat |
376 |
Q |
| |
|
|||||||| || |||||||| | |||| ||||||||||||||||||||| || ||| | |||||||||||| |
|
|
| T |
45512417 |
ttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat |
45512346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 3745085 - 3745138
Alignment:
| Q |
179 |
gcagcattaagcacagcactattcaataatggactaagttgtggttcttgtttt |
232 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| | ||||||| | |||||| |
|
|
| T |
3745085 |
gcagcactaagcacagctctattcaataatggacttacttgtggtgcatgtttt |
3745138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 3814994 - 3814902
Alignment:
| Q |
131 |
gcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt |
223 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| ||||||||| | ||||| ||| ||||||| ||||| | ||||||||| |
|
|
| T |
3814994 |
gcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
3814902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 38165269 - 38165331
Alignment:
| Q |
299 |
actaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcct |
361 |
Q |
| |
|
||||| |||||||| || |||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
38165269 |
actaatttttgtcccccaaactttgctcttcctagtgacaatggtggttggtgtaatcctcct |
38165331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 11591395 - 11591494
Alignment:
| Q |
123 |
taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtgg |
222 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||| || |||||||| || |||||||| | |||| |||| ||||| |
|
|
| T |
11591395 |
taggtggagcatgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgg |
11591494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 27477662 - 27477593
Alignment:
| Q |
123 |
taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcac |
192 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| ||||| |||||| |||||||||||| ||||||| |
|
|
| T |
27477662 |
taggtggagcatgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcac |
27477593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 42965929 - 42966033
Alignment:
| Q |
124 |
aggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt |
223 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||| |||||| ||||| || ||| ||||||| || || ||||| |||||| | |||||||| |
|
|
| T |
42965929 |
aggaggggcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagcactgctcttttcaacaatggattgagttgtggg |
42966028 |
T |
|
| Q |
224 |
tcttg |
228 |
Q |
| |
|
||||| |
|
|
| T |
42966029 |
tcttg |
42966033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 27488887 - 27488818
Alignment:
| Q |
123 |
taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcac |
192 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||| ||||| |||||| |||||||||||| ||||||| |
|
|
| T |
27488887 |
taggtggagcatgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcac |
27488818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 42974360 - 42974464
Alignment:
| Q |
124 |
aggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt |
223 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||| |||||| ||||| || ||| |||| || || || ||||| |||||| | |||||||| |
|
|
| T |
42974360 |
aggaggtgcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagtactgctcttttcaacaatggattgagttgtggg |
42974459 |
T |
|
| Q |
224 |
tcttg |
228 |
Q |
| |
|
||||| |
|
|
| T |
42974460 |
tcttg |
42974464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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