View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_high_1 (Length: 809)
Name: NF9301_high_1
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 43165586 - 43166020
Alignment:
| Q |
19 |
cactgtgccacaccacatcgtcacacctgtttatgtttgctaatgcaacttatgttttgtgccaa-gtgataggcaaaaaattatttgatggctatcttg |
117 |
Q |
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| T |
43165586 |
cactgtgccacaccacatcatcacacctgtttatgtttgctaatgcaacttatgtttagtgccaaagtgataggcaaaaaattatttgatggctatcttg |
43165685 |
T |
|
| Q |
118 |
acttgacttgacagctccatgaagaaagactccacttatgtcatgtggtgataagttatgccatgtgagattattaatccacacatacacatctaataac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43165686 |
acttgacttgacagctccatgaagaaagactccacttatgtcatgtggtgataagttatgccatgtgagattattaatccacacatacacatctaataac |
43165785 |
T |
|
| Q |
218 |
aacatcctttgctggctggttttggttttagtttctgcttatgtaagaggaaatcactagcaaagcatggtccaccaattactcattggacaatgtcaag |
317 |
Q |
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| T |
43165786 |
aacatcctttcctggctggttttggttttagtttctgcttatgtaagaggaaatcacgagcaaagcatggtccaccaattactcattggacaatgtcaag |
43165885 |
T |
|
| Q |
318 |
atcgttgtcgacattacatacgccacgttagtaatgattctgagagaaaattttgatacgatacccacacactgactaataataataattaactaacaaa |
417 |
Q |
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| T |
43165886 |
atcgttgtcgacattacatacgccacgttagt-atgattctgaaagaaaattttgatacgatacccacacactaac---taataataattaactaacaaa |
43165981 |
T |
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| Q |
418 |
taatggtctataaagtcagttataagatttgttaaattt |
456 |
Q |
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| T |
43165982 |
taatggtctataaagtcagttataagatttgttaaattt |
43166020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 481 - 798
Target Start/End: Original strand, 43166010 - 43166328
Alignment:
| Q |
481 |
ttgttaaattttaatgtttattctaaacagctatatcgggaccttgtgagtgtgacctgagtccaatattagtgttataactggtgcacacgatcgatag |
580 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43166010 |
ttgttaaattttaatgtttattataaacagctatatcgggaccttgtgagtgtgacctgagtccaatattagtgttataactggtgcacacgatcgatag |
43166109 |
T |
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| Q |
581 |
tgcttgaactcattgtaataatttcattaaacaacacattattgtctatcaaaaatatccattgagtttatgattagaagggatttaatatatgta-ttt |
679 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43166110 |
tgcttgaactcattgtaataattacattaaacaacacattattgtctatcaaaaatatacattgagtttatgattagaagggatttaatatatgtatttt |
43166209 |
T |
|
| Q |
680 |
tctaataaaacaatgtttaatgcnnnnnnngtacacgtcatataactacttgataaatgacattttcagtaaccttataaatgcagaaatgacattttca |
779 |
Q |
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||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43166210 |
tctaataaaacaaagtttaatgcaaaaaaagtacacatcatataactacttgataaatgacattttcagtaaccttataaatgcagaaatgacattttca |
43166309 |
T |
|
| Q |
780 |
gttcagtctgatgtccatc |
798 |
Q |
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|||||||||| |||||||| |
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| T |
43166310 |
gttcagtctgttgtccatc |
43166328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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