View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9301_low_10 (Length: 380)

Name: NF9301_low_10
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9301_low_10
NF9301_low_10
[»] chr5 (5 HSPs)
chr5 (1-365)||(1744285-1744649)
chr5 (1-365)||(1738942-1739306)
chr5 (13-365)||(1759999-1760357)
chr5 (96-365)||(1724448-1724717)
chr5 (129-205)||(1763490-1763566)
[»] chr3 (4 HSPs)
chr3 (7-365)||(3167167-3167534)
chr3 (16-198)||(3156912-3157094)
chr3 (89-365)||(2022801-2023086)
chr3 (114-198)||(3139198-3139282)
[»] chr8 (2 HSPs)
chr8 (16-198)||(23852062-23852244)
chr8 (16-198)||(23856629-23856812)
[»] chr7 (3 HSPs)
chr7 (89-163)||(9012087-9012161)
chr7 (238-336)||(9011902-9012000)
chr7 (297-363)||(7484275-7484341)


Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 1744285 - 1744649
Alignment:
Q  1 ttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  1744285 ttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagaaaaaaatggattcaaggtc 1744384  T
Q  101 tttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  1744385 tttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataagacggaacgtgcattacaaaagcaactt 1744484  T
Q  201 aaacagaagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtg 300  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  1744485 aaacagaagtacgtattaggtttagagcagcctcttcttaacccttattttagttatccaaacactctttttacaccccctaattatggggcactcggtg 1744584  T
Q  301 ttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1744585 ttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 1744649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 1738942 - 1739306
Alignment:
Q  1 ttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||| |||| |||||| ||||||||| |    
T  1738942 ttagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagggaaagatgagaacaagaatgaggagaaaaaaatggattcaaggac 1739041  T
Q  101 tttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  1739042 tttttcatgcttattttgcaagggaaaattttctacttcgcaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcgttgcaaaagcaactt 1739141  T
Q  201 aaacagaagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtg 300  Q
    ||||| | ||||| ||||||||||||||| ||||||||||||||||||||| | || ||||||||| ||||||  ||||||||||| |||||||||||||    
T  1739142 aaacaaaggtatgaattaggtttagggcaacctcttcttaacccttatttttgctacccaaacactttttttacaccccctaattacggggcactcggtg 1739241  T
Q  301 ttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 365  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  1739242 ttagaatggaatctatgattcaaaaaccatcttatattaaccctaggattgccccacatggtttt 1739306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 1759999 - 1760357
Alignment:
Q  13 aagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatga------gaacaagagtgaagagagaaaaatagattcaaggtctttttc 106  Q
    ||||||||||||||||| |||||||||||||||||||  |||  || |||||      ||||||||   |||||| |||  | |||||||||||||||||    
T  1759999 aagttggttcatcatctggttttccaaataacaacaaagaagagaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttc 1760098  T
Q  107 atgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaacttaaacag 206  Q
    ||| |||||||||||| |||||||| |||||||||| ||||| || || |||||||| ||| ||||||| |||||||||||| ||||||||| ||||||     
T  1760099 atgtttattttgcaagagaaaatttactacttcacaggcgttgggagggcaccaaaatgcttataaggcggaacgtgcattagaaaagcaacgtaaacaa 1760198  T
Q  207 aagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtgttagaa 306  Q
    | ||| | ||||||||||||| | |||| | ||||||||||||||||||||||| | ||| ||||||  ||| |  ||||| |||||||||||||| |||    
T  1760199 aggtaggaattaggtttagggtaacctcattttaacccttattttagttatccagatactttttttacaccctcgtattatagggcactcggtgttggaa 1760298  T
Q  307 tggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 365  Q
    ||||| ||||||| |||||||||||| ||||||||||  |||||||  ||||| |||||    
T  1760299 tggaacctatgatccaaaaaccatctgatattaaccctaggattacgtcacatagtttt 1760357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 96 - 365
Target Start/End: Original strand, 1724448 - 1724717
Alignment:
Q  96 aggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagc 195  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||    
T  1724448 aggtctttttcatgcttattttgcaagagaaaattttctacttcacaggcgttaggagggcaccaaaatgctcataaggcagaacgtgcattaaaaaagc 1724547  T
Q  196 aacttaaacagaagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcact 295  Q
    ||| |||||  | |||||  |||||||||||  | ||||   |||||| |||||||||||||||||| |   ||||||   ||||| ||||| ||  |||    
T  1724548 aacgtaaactaaggtatgatttaggtttaggagaacctcactttaacctttattttagttatccaaatagcttttttacatccccttattatcggaaact 1724647  T
Q  296 cggtgttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 365  Q
    ||| |||||| ||||||||||||||||||| |||||||| |||| ||| ||||||||| ||||| |||||    
T  1724648 cggcgttagagtggaatctatgattcaaaatccatcttacattagccctgggattacctcacatagtttt 1724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 1763566 - 1763490
Alignment:
Q  129 ttttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaacttaaaca 205  Q
    ||||||||||||||  ||||||| || || ||||| ||||||||||| |||| ||||||| ||||||||| ||||||    
T  1763566 ttttctacttcacatacgttaggagggcatcaaaaagctcataaggcggaacatgcattagaaaagcaacgtaaaca 1763490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 3167167 - 3167534
Alignment:
Q  7 ctatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttc 106  Q
    |||| |||| ||||||||||| || |||||  |||||||||||| |||| || ||||||||||| | ||  ||||  ||   |||||||| |||||||||    
T  3167167 ctattcaaggtggttcatcatatttttttcgtaataacaacaatgaagggaaagatgagaacaacaatgctgagaacaattcagattcaaagtctttttc 3167266  T
Q  107 atgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaacttaaacag 206  Q
    ||| |  ||||||||| ||||||||||||| |||||||||||||| ||||| || || || |||||||| |||||||| ||| |||| |||| ||||||     
T  3167267 atgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaa 3167366  T
Q  207 aagta---------tgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcg 297  Q
    |||||         ||| || ||||||||||| |||    ||||||||||||||||||||||||| ||||||||||  ||| || |||||  ||  || |    
T  3167367 aagtatgaaaatggtgtttttggtttagggcaaccttactttaacccttattttagttatccaaatactctttttacaccctcttattataaggggcttg 3167466  T
Q  298 gtgttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 365  Q
    |   |||||||||||| ||||||||||| |||||||||||||||||  ||||||| |||||| |||||    
T  3167467 gaactagaatggaatccatgattcaaaagccatcttatattaaccctaggattactccacatagtttt 3167534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 3157094 - 3156912
Alignment:
Q  16 ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttcatgcttatt 115  Q
    |||||||||| ||||||||||| ||| | |||||| ||||||| ||||||||||  | ||||||||  ||    ||||||||||||||||||||||  ||    
T  3157094 ttggttcatcgtcttgttttcctaatgataacaatcaaggaaaagatgagaacatcaatgaagagaagaattcggattcaaggtctttttcatgctcctt 3156995  T
Q  116 ttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 198  Q
    ||| ||| || |||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||| |||||||||    
T  3156994 ttgtaagagacaattttctacttcacaagcgttgggaggacaccagaacgctcataaggcggaacgtgctttagaaaagcaac 3156912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 365
Target Start/End: Original strand, 2022801 - 2023086
Alignment:
Q  89 agattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcatta 188  Q
    |||||||| |||||||||||| |  ||||||||| |||||||||||||||| ||||| ||||| |||||||| || || |||||||| |||||| | |||    
T  2022801 agattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttcgcaagccttaggaggacaccagaatgcccataaggctgaacgtacgtta 2022900  T
Q  189 caaaagcaacttaaacagaagtatgta---------ttaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatcccc 279  Q
     |||| |||| |||||| | ||||| |         || ||||||||||| ||||   ||||||||||||||||||||||||  ||||||||||  | ||    
T  2022901 gaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttattttagttatccaagtactctttttacacgcc 2023000  T
Q  280 ctaattatggggcactcggtgttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtttt 365  Q
    || ||| | | ||| | ||   |||||||||||| |||||||||||||||  || |||||||||  | ||||| |||||| |||||    
T  2023001 cttattttagcgcaattgggactagaatggaatccatgattcaaaaaccactttttattaaccctagaattactccacatagtttt 2023086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 3139282 - 3139198
Alignment:
Q  114 ttttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 198  Q
    ||||||||| || |||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| |||||| |||||||||    
T  3139282 ttttgcaagagacaattttctacttcacaggcgttgggaggacatcagaacgcacataaggcggaacgggcattagaaaagcaac 3139198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 23852062 - 23852244
Alignment:
Q  16 ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttcatgcttatt 115  Q
    |||||||||| ||||||||||| |   |||||||| ||||||| ||||||||||  | ||||||||  ||   ||||||||| || ||||||||||  ||    
T  23852062 ttggttcatcgtcttgttttcctaccgacaacaatcaaggaaaagatgagaacatcaatgaagagaagaattcagattcaagatccttttcatgctcctt 23852161  T
Q  116 ttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 198  Q
    ||| ||| |  ||||||||||||| |||||||| || |||||||| |||||||||||||| |||||| | ||| |||||||||    
T  23852162 ttgtaagaggcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaac 23852244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 23856629 - 23856812
Alignment:
Q  16 ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttcatgcttatt 115  Q
    |||||||||| ||||||||||| |||  ||||||| ||||||| ||||||||||  | | |||||   ||  |||||||||| || ||||||||||| ||    
T  23856629 ttggttcatcgtcttgttttcctaatgccaacaatcaaggaaaagatgagaacatcaataaagaggagaatttagattcaagatccttttcatgcttttt 23856728  T
Q  116 t-tgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 198  Q
    | || ||| || | | ||||||||||||| |||| || |||||||| |||||||||||| | |||| | | ||| |||||||||    
T  23856729 tgtgtaagagacactattctacttcacaatcgttgggaggacaccagaacgctcataagacggaacatactttagaaaagcaac 23856812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 9012161 - 9012087
Alignment:
Q  89 agattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaa 163  Q
    |||||||||||| |||||||||   | |||||||| ||||||||||||| |||||||||| ||||| ||||||||    
T  9012161 agattcaaggtcattttcatgcacctattgcaaggcaaaattttctactgcacaagcgttgggtgggcaccaaaa 9012087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 9012000 - 9011902
Alignment:
Q  238 ttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtgttagaatggaatctatgattcaaaaaccatcttata 336  Q
    |||||||||||||||||||||  |  ||||||||||  ||   ||||||| ||  || ||| |||||||||||||| ||||||||||||||| ||||||    
T  9012000 ttaacccttattttagttatcgtagtactctttttacaccttataattataggctacccggggttagaatggaatcaatgattcaaaaaccaccttata 9011902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 7484341 - 7484275
Alignment:
Q  297 ggtgttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtt 363  Q
    |||||||||||||| || |  |||||||||||| |||||| ||||||  ||||||||||| ||||||    
T  7484341 ggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggattaccccaaatggtt 7484275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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