View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_13 (Length: 325)
Name: NF9301_low_13
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 4388337 - 4388563
Alignment:
| Q |
15 |
acaaagttcataataaccatatagtaaaagaacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacac |
114 |
Q |
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| T |
4388337 |
acaaagttcataataaccatatagtaaaagaacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacac |
4388436 |
T |
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| Q |
115 |
aattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaagacataaacatcgataacagtcaaagtctaggtatttaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
4388437 |
aattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaagatataaacatcgataacagtcaaattctaggtatttaat |
4388536 |
T |
|
| Q |
215 |
ctagaaaatctttcaaatttaatcaga |
241 |
Q |
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| T |
4388537 |
ctagaaaatctttcaaatttaatcaga |
4388563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 4375746 - 4375890
Alignment:
| Q |
99 |
taagaaagccaaacacaattcataagtcacaaattcataccttaagctata--gtattaagcttttaacaagtaccaagacataaacatcgataacagtc |
196 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||| |
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| T |
4375746 |
taagaaagccaaacacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtc |
4375845 |
T |
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| Q |
197 |
aaagtctaggtatttaatctagaaaatctttcaaatttaatcaga |
241 |
Q |
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| T |
4375846 |
aaattctaggtatttaatctagaaaatctttcaaatttaatcaga |
4375890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 4383341 - 4383476
Alignment:
| Q |
76 |
cattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaag |
175 |
Q |
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| T |
4383341 |
cattaaactcaagtgaaaacccataagaaagccaaacacaattcacaagtcacaaattaaaaccttaagc--aagtattaaggatttaacaagtaccaag |
4383438 |
T |
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| Q |
176 |
acataaacatcgataacagtcaaagtctaggtatttaatc |
215 |
Q |
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| T |
4383439 |
--ataaacatcgataatagtcaaattctaggtatttaatc |
4383476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 4368505 - 4368629
Alignment:
| Q |
45 |
aacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaag |
144 |
Q |
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|||||| |||||||||||||| ||| || || ||||||||| |||||| ||||| ||||| || |||||| | |||||||||||||| | | |||||| |
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| T |
4368505 |
aacatatataagaaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaag |
4368604 |
T |
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| Q |
145 |
ctatagtattaagcttttaacaagt |
169 |
Q |
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||||| |||||||||||| |||||| |
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| T |
4368605 |
ctataatattaagcttttcacaagt |
4368629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 4364116 - 4364239
Alignment:
| Q |
45 |
aacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaag |
144 |
Q |
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|||||| |||||||||| ||||||| || || || |||||| ||||| |||||| | || || ||||||||||||||||||||||| | |||||| |
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| T |
4364116 |
aacataaataagaaaattactacagacagtacactacacttaattcaaa-cccataggtaattcatacacaattcataagtcacaaattacaaacttaag |
4364214 |
T |
|
| Q |
145 |
ctatagtattaagcttttaacaagt |
169 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
4364215 |
cttgagtattaagcttttaacaagt |
4364239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 5727018 - 5726978
Alignment:
| Q |
193 |
agtcaaagtctaggtatttaatctagaaaatctttcaaatt |
233 |
Q |
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||||||| |||| |||||||||||||||||| ||||||||| |
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| T |
5727018 |
agtcaaattctatgtatttaatctagaaaatatttcaaatt |
5726978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 3596363 - 3596281
Alignment:
| Q |
159 |
ttttaacaagtaccaagacataaacatcgataacagtcaaagtctaggtatttaatctagaaaatctttcaaatttaatcaga |
241 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||| |
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| T |
3596363 |
ttttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaatcaga |
3596281 |
T |
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