View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_15 (Length: 317)
Name: NF9301_low_15
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 15788980 - 15789295
Alignment:
| Q |
1 |
tattggattgtcaaagcttcgaagtagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggct |
100 |
Q |
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| T |
15788980 |
tattggattgtcaaagcttcgaagtagagaaagtcacattgcaatgaataatcgttttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggct |
15789079 |
T |
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| Q |
101 |
tgtccagaaacatataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaat |
200 |
Q |
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| T |
15789080 |
tatccagaaacatataaatgcgatgtttatagttttggtattgttctatttgaaattgtaggtagaagaacgcattttattgatcctacatatagtgaat |
15789179 |
T |
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| Q |
201 |
tacaaatttggttttcaaaaaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaa |
300 |
Q |
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| T |
15789180 |
cacaaatttggttttcaaaaaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaa |
15789279 |
T |
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| Q |
301 |
agctgagagaatgtta |
316 |
Q |
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| T |
15789280 |
agctgagagaatgtta |
15789295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 15793183 - 15793493
Alignment:
| Q |
3 |
ttggattgtcaaagcttcgaagtagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttg |
102 |
Q |
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| T |
15793183 |
ttggattagcaaagcttagaagtagagaaagtaacattgaactgaatactcactttagaggaacgagaggatatgccgcaccagaaatgtggaagcctta |
15793282 |
T |
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| Q |
103 |
tccagaaacatataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaatta |
202 |
Q |
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| T |
15793283 |
tccagtgacatataagtgtgatgtttatagttttggtattcttttatttgaaattgtagggagaagacggcatttt---gattctagctatagtgaatca |
15793379 |
T |
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| Q |
203 |
caaatttggttttcaaaaaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaag |
302 |
Q |
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| T |
15793380 |
caacaatggtttccaagatggacatgggaaatgtttgagaataatgaattggttgttatgcttgcactttgtgaaattgaagagaaagatagtgagatag |
15793479 |
T |
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| Q |
303 |
ctgagagaatgtta |
316 |
Q |
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| T |
15793480 |
cagagagaatgtta |
15793493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 15778919 - 15778628
Alignment:
| Q |
21 |
gaagtagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttgtccagaaacatataaatg |
120 |
Q |
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| T |
15778919 |
gaagtagagaaagtaacattgtaatgaatactcactttagaggaacgcgaggttatgctgcacctgaaatgtggaagccttatccagttacacacaagtg |
15778820 |
T |
|
| Q |
121 |
tgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaattacaaatttggttttcaaaa |
220 |
Q |
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| T |
15778819 |
tgatgtttatagttttggtattcttctatttgaaattgttggcagaagaaggcatt---tcgattctagttacagtgaatcgcaacaatggtttccaaag |
15778723 |
T |
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| Q |
221 |
aggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaagctgagagaatgtt |
315 |
Q |
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| T |
15778722 |
tggacatgggaaatgtttgagaataatgaattggttgttatgcttgcgctttgtggagttgaagagaaagataatgagatagcagagagaatgtt |
15778628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 15773079 - 15773135
Alignment:
| Q |
114 |
ataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
170 |
Q |
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| T |
15773079 |
ataaatgtgatgtttatagttttggtatgctattatttgaaattataggtaggagaa |
15773135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 15794889 - 15794833
Alignment:
| Q |
114 |
ataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
170 |
Q |
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| T |
15794889 |
ataaatgtgatgtttatagttttggtatgctgttatttgaaattgttggtaggagaa |
15794833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 15768453 - 15768504
Alignment:
| Q |
119 |
tgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
170 |
Q |
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| T |
15768453 |
tgtgacgtttatagttttggtatactactatttgaaattataggtaggagaa |
15768504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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