View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_16 (Length: 304)
Name: NF9301_low_16
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_16 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 25006894 - 25007197
Alignment:
| Q |
1 |
aaagcaagagcagctttgttgggcgagcaacatttctcccaacaaagcatggtggtttagtggatagacaagaatgaattcgtctaccgtgacaacactt |
100 |
Q |
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| T |
25006894 |
aaagcaagagcagctttgttgggcgagcaacatttctcccaacaaagcatggtggtttagtggatagacaagaatgaattcgtctaccatgacaacactt |
25006993 |
T |
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| Q |
101 |
ttatgattagcataaatagacttgttaacataattcttggaatatttttacactctcaatctcgttttaagagggagaaacttggggaaacatagacttg |
200 |
Q |
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| T |
25006994 |
ttatgattagcataaatagacttgttaacataattcttggaatatttttacactctcaatctcgttttaagagggagaaacttggggaaacatagacttg |
25007093 |
T |
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| Q |
201 |
ttagcatggtggtttattttctttgatttaattatgttctcaatacttattctgacgtgcaatccaaaattgaacatttaatttagaaagtgtgagacat |
300 |
Q |
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| T |
25007094 |
ttagcatggtggtttattttctttgatttaattatgttctcaatacttattctgacgtgcaatccaaaattgaacatttaatttagaaagtgtgagacat |
25007193 |
T |
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| Q |
301 |
cgac |
304 |
Q |
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|||| |
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| T |
25007194 |
cgac |
25007197 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 23083941 - 23083856
Alignment:
| Q |
220 |
tctttgatttaattatgttctcaatacttattctgacgtgcaatcc-aaaattgaacatttaatttagaaagtgtgagacatcgac |
304 |
Q |
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| T |
23083941 |
tctttggtttaattccgttcttaatgctttttctgacgagcaatccgaaaattgaacttttgatttagaaagtgtgagacatcgac |
23083856 |
T |
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