View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9301_low_17 (Length: 291)

Name: NF9301_low_17
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9301_low_17
NF9301_low_17
[»] chr8 (2 HSPs)
chr8 (163-282)||(960587-960706)
chr8 (16-106)||(960148-960238)
[»] chr7 (1 HSPs)
chr7 (196-271)||(39038153-39038228)
[»] chr2 (5 HSPs)
chr2 (196-271)||(31548768-31548846)
chr2 (196-273)||(41302195-41302272)
chr2 (207-270)||(24484757-24484820)
chr2 (196-271)||(38565973-38566048)
chr2 (196-233)||(25621983-25622020)
[»] chr6 (4 HSPs)
chr6 (196-270)||(22524995-22525069)
chr6 (202-271)||(31130056-31130125)
chr6 (197-273)||(3228969-3229045)
chr6 (197-231)||(15603684-15603718)
[»] chr1 (3 HSPs)
chr1 (196-267)||(42055721-42055795)
chr1 (35-92)||(21906680-21906737)
chr1 (197-233)||(12783463-12783499)
[»] chr4 (1 HSPs)
chr4 (196-271)||(9921602-9921677)
[»] chr5 (1 HSPs)
chr5 (196-271)||(16686642-16686720)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 960587 - 960706
Alignment:
Q  163 ccgcttttcagtactagataaatgnnnnnnnaagcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaa 262  Q
    |||||||| |||||||||||||||       ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  960587 ccgctttttagtactagataaatgtttttttaagcaacatatgaaaataaatcaaatatttcataaacactggaatgaaataaaataccttagtagagaa 960686  T
Q  263 caatagcacctaagaataat 282  Q
    ||||||||||||||||||||    
T  960687 caatagcacctaagaataat 960706  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 960148 - 960238
Alignment:
Q  16 aatatcaagtgtaagttaactcaggactgttcctagaattttatgagcctcagacataatatgagagaagggcccttggcataatatatca 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  960148 aatatcgagtgtaagttaactcaggactgttcctagaattttatgagcctcagacataatatgagagaagggcccttgtcataatatatca 960238  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 39038153 - 39038228
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagcac 271  Q
    |||||||||||||||| ||||||||||||| | ||| |  ||  |||||||||||| |||||||||||||||||||    
T  39038153 gcaacatatgaaaatacatcaaatacttcacagacatcaaaacaaaataaaataccgtagtagagaacaatagcac 39038228  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 31548768 - 31548846
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaatacctt---agtagagaacaatagcac 271  Q
    |||||||||||||||||||||||||||| |||||||||  ||  |||||||||| | |   ||||||||||||||||||    
T  31548768 gcaacatatgaaaataaatcaaatactttataaacaccaaaacaaaataaaatatcatagaagtagagaacaatagcac 31548846  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 41302195 - 41302272
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagcacct 273  Q
    ||||||| ||||||||||||||| |||| ||| |||||  ||  || ||||||||| ||| |||||||||||||||||    
T  41302195 gcaacatctgaaaataaatcaaaaactttatagacaccaaaacaaattaaaataccgtagaagagaacaatagcacct 41302272  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 24484820 - 24484757
Alignment:
Q  207 aaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagca 270  Q
    ||||||||||||||||| ||| |||||  ||  |||||||||||| ||| ||||||||||||||    
T  24484820 aaataaatcaaatactttatagacaccaaaacaaaataaaataccgtagaagagaacaatagca 24484757  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 38565973 - 38566048
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagcac 271  Q
    ||||||| |||||||||||||||||||| ||| |||||  ||  ||| |||||||| ||| |||||| ||||||||    
T  38565973 gcaacatctgaaaataaatcaaatactttatagacaccaaaacaaaacaaaataccgtagaagagaataatagcac 38566048  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 25622020 - 25621983
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacacc 233  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  25622020 gcaacatataaaaataaatcagatacttcataaacacc 25621983  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 22525069 - 22524995
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagca 270  Q
    ||||||| |||||||||||||||||||| ||| ||| |  ||  |||||||||||| ||| ||||||||||||||    
T  22525069 gcaacatctgaaaataaatcaaatactttatagacatcaaaacaaaataaaataccatagaagagaacaatagca 22524995  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 31130125 - 31130056
Alignment:
Q  202 tatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagcac 271  Q
    |||||||||||||||||||||| | ||||||   ||  |||||||| ||||||| |||||||||||||||    
T  31130125 tatgaaaataaatcaaatactttacaaacactaaaacaaaataaaaaaccttagaagagaacaatagcac 31130056  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 3228969 - 3229045
Alignment:
Q  197 caacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagcacct 273  Q
    |||||| |||||||||||||||||| | ||||| |||  ||  |||||||||||| ||| |||||||||||| ||||    
T  3228969 caacatttgaaaataaatcaaatacattataaataccaaaacaaaataaaataccgtagaagagaacaatagaacct 3229045  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 15603684 - 15603718
Alignment:
Q  197 caacatatgaaaataaatcaaatacttcataaaca 231  Q
    |||||| ||||||||||||||||||||||||||||    
T  15603684 caacatctgaaaataaatcaaatacttcataaaca 15603718  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 42055721 - 42055795
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaatacctt---agtagagaacaata 267  Q
    |||||||||||||||||||||||||||| ||| |||||  ||  |||||||||||| |   ||||||||||||||    
T  42055721 gcaacatatgaaaataaatcaaatactttatagacaccaaaacaaaataaaataccgtagaagtagagaacaata 42055795  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 21906737 - 21906680
Alignment:
Q  35 ctcaggactgttcctagaattttatgagcctcagacataatatgagagaagggccctt 92  Q
    |||||| | ||||||||||||||||| |||| || |||||||||| | ||||||||||    
T  21906737 ctcaggtccgttcctagaattttatgggccttaggcataatatgaaaaaagggccctt 21906680  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 12783463 - 12783499
Alignment:
Q  197 caacatatgaaaataaatcaaatacttcataaacacc 233  Q
    |||||| | ||||||||||||||||||||||||||||    
T  12783463 caacatcttaaaataaatcaaatacttcataaacacc 12783499  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 9921602 - 9921677
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaataccttagtagagaacaatagcac 271  Q
    ||||||| |||||||||||||||||||| ||| |||||  ||| ||||||||||   ||| | |||||||||||||    
T  9921602 gcaacatctgaaaataaatcaaatacttgatagacaccaaaataaaataaaatattgtagaaaagaacaatagcac 9921677  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 16686642 - 16686720
Alignment:
Q  196 gcaacatatgaaaataaatcaaatacttcataaacaccggaatgaaataaaatacc---ttagtagagaacaatagcac 271  Q
    ||||||| ||||||||||||| |||||||||| |||||  ||  ||||||||||||   | |||| |||||||||||||    
T  16686642 gcaacatctgaaaataaatcagatacttcatagacaccaaaacaaaataaaataccgtataagtatagaacaatagcac 16686720  T

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