View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_18 (Length: 285)
Name: NF9301_low_18
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 54 - 266
Target Start/End: Complemental strand, 3576433 - 3576233
Alignment:
| Q |
54 |
cgaatcaatt-cacagtacatgtggcatattataatcacgcttgcttccttgaattccgccaattcaccatgtttgcctctaaatgatgaattatcattg |
152 |
Q |
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| T |
3576433 |
cgaatcaatttcacagtacatgtggcatattataatcacgcttgcttccttgaattccgccaattcaccatgtttgcctctaaatgatgaattatcattg |
3576334 |
T |
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| Q |
153 |
ggcaattctgatttgtgatgctctcgtgagtttttctcttgcgggatatagcatcactcttgtttgtcactcttgtttgtctctagaaaacacaagaaaa |
252 |
Q |
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| T |
3576333 |
ggcaattctgatttgtgatgctctcgtgagtttttctcttgcgagatatagcatcactcttgtt-------------tgtctctagaaaacacaagaaaa |
3576247 |
T |
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| Q |
253 |
ttaagagatactat |
266 |
Q |
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|||||||||||||| |
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| T |
3576246 |
ttaagagatactat |
3576233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 37449441 - 37449353
Alignment:
| Q |
21 |
gaaaaatgttatttgaagcaaaggaatagcaagcgaatcaattcacagtacatgtggcatattataatcacgcttgcttccttgaattc |
109 |
Q |
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| T |
37449441 |
gaaaaatgctatttgaaacgaaggaataacaagcaaattgattcacgttacatgtcgcatattataatcacacttgcttctttaaattc |
37449353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 13824738 - 13824834
Alignment:
| Q |
116 |
ttcaccatgtttgcctctaaatgatgaattatcattgggcaattctgattt-gtgatgctctcgtgagtttttctcttgcgggatatagcatcactctt |
213 |
Q |
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| T |
13824738 |
ttcaccatgtttgccgctaaatgctgatttatcaatggccaaatctaatttcgtgatgctctcgtgaggatttctct--cacgatatagcatcactctt |
13824834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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