View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_20 (Length: 283)
Name: NF9301_low_20
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 25103562 - 25103407
Alignment:
| Q |
18 |
aggtggtc-ccttcaaagcttagtaatcaaataattaagttactta----gctataaaagaggaggcaagggcggctgaagagagatagcaaacccatga |
112 |
Q |
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| T |
25103562 |
aggtggtcaccttcaaagcttagtaatcaaataattaagttacttacttagctataaaagaggaggcaagggcggctgaagagagatagcaaacccatga |
25103463 |
T |
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| Q |
113 |
gttaggaaatagtagccattggttaaaaaaggtggcaataattaatacttataacag |
169 |
Q |
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| T |
25103462 |
gttaggaaagagtagccattggtta-aaaaggtggcaataattaatacttataacag |
25103407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 25102595 - 25102506
Alignment:
| Q |
176 |
tcctcgcattttaacgg-tttttaactttagtctctcgactcttttctttggcattgattcttatactttataaaaatattgacattaat |
264 |
Q |
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| T |
25102595 |
tcctcgcattttaaccaatttttaactttagtctaaacactcttttctttagcattgattcttatactttataaaaatattgacattaat |
25102506 |
T |
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