View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_21 (Length: 271)
Name: NF9301_low_21
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 419884 - 419643
Alignment:
| Q |
15 |
cagagagtgcactttgtgaggctgctagtatcggaggagcaattcggatactggttgagacaattgaagatggatcttcactaggaaaagagcatgcagt |
114 |
Q |
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| T |
419884 |
cagagagtgcactttgtgaggctgctagtatcggaggagcaattcggatactggttgagacaattgaagatggatcttcactaggaaaagagcatgcagt |
419785 |
T |
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| Q |
115 |
tggcatacttctgcttatatgtcaaagctgcagagaaaaatatagagtattgattttgacagatggggtgatgccaggattacttcagttaaccgtcgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419784 |
tggcatacttctgcttatatgtcaaagctgcagagaaaaatatagagtattgattttgacagatggggtgatgccaggattacttcagttaaccgtcgat |
419685 |
T |
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| Q |
215 |
ggaacgtggagagccaaatcgacggctagggaattgttgttg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
419684 |
ggaacgtggagagccaaatcgacggctagggaattgttgttg |
419643 |
T |
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