View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_23 (Length: 265)
Name: NF9301_low_23
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15789297 - 15789545
Alignment:
| Q |
1 |
aggttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattttacaggctcc |
100 |
Q |
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| T |
15789297 |
aggttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattttacaggctcc |
15789396 |
T |
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| Q |
101 |
atttcccttccataatcgggtttcggttaaagaaaattcggcacaagaggggagcactgcatattctgatactgcaacctcatcatggcatacataatct |
200 |
Q |
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| T |
15789397 |
atttcccttccataatcgggtttcggttaaagaaaattcgacacaagaggggagcactgcatattctaatactgcaacctcatcatggcatacataatct |
15789496 |
T |
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| Q |
201 |
ttgagagaatctggtttcagagccaaacaaaatacatttcagattgaaa |
249 |
Q |
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| T |
15789497 |
ttgagagaatctggtttcagagccaaacaaaatacatttcagattgaaa |
15789545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15793495 - 15793743
Alignment:
| Q |
1 |
aggttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattt-tacaggctc |
99 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| || |||| | || ||| |
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| T |
15793495 |
aggttgctctatggtgtgttcaatattcaccaaatgatagacctctaatgagtactgttgtgaagatgttagagggtgaaattgatatttcttca-cctc |
15793593 |
T |
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| Q |
100 |
catttcccttccataatcgggtttcggttaaagaaaattcggcacaagaggggagcactgcatattctgatactgcaacctcatcatggcatacataatc |
199 |
Q |
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| T |
15793594 |
catttccttttcataatctggttcctgctaaagaaaattcgacacaagagggaagtactgcagattctgatacgactacatcatcatggcgtaccgaatc |
15793693 |
T |
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| Q |
200 |
tttgagagaatctggtttcagagccaaacaaaatacatttcagattgaaa |
249 |
Q |
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| T |
15793694 |
ttcaagagagtctggttttaaaaccaaacacaatgcatttgagattgaaa |
15793743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15778625 - 15778414
Alignment:
| Q |
1 |
aggttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattt-tacaggctc |
99 |
Q |
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||||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||| | || ||| |
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| T |
15778625 |
aggttgctctatggtgtgttcagtattcaccaaatgatagacctctaatgagtactgttgtaaagatgttagagggtgaaattgaaatttcttca-cctc |
15778527 |
T |
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| Q |
100 |
catttcccttccataatcgggtttcggttaaagaaaattcggcacaagaggggagcactgcatattctgatactgcaacctcatcatggcatacataatc |
199 |
Q |
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|||||||||||||||||| |||| | ||||||||||||| | ||||||| || ||||||||| |||||||| || | | ||||| ||| ||||| |||| |
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| T |
15778526 |
catttcccttccataatctggttcctgttaaagaaaatttgacacaagaaggaagcactgcagattctgatgctactatatcatcgtggaatacagaatc |
15778427 |
T |
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| Q |
200 |
tttgagagaatct |
212 |
Q |
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||| || |||||| |
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| T |
15778426 |
ttttagcgaatct |
15778414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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