View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_26 (Length: 247)
Name: NF9301_low_26
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 6314817 - 6315048
Alignment:
| Q |
16 |
acatcagggttggtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataaccaaaaggatcaggaggaccag |
115 |
Q |
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| T |
6314817 |
acatcagggttagtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataaccaaaaggatcaggaggaccag |
6314916 |
T |
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| Q |
116 |
ctctgtctttctcagactgtggttttttgaaaaaccttagtgcttcattttccaaattggacataaattccaaaggaacaccatggttcaccactttgaa |
215 |
Q |
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| T |
6314917 |
ctctgtctttctcagactgtggttttttgaaaaaccttagtgcttcattttccaaattggacataaattccaaaggaacaccatggttcaccactttgaa |
6315016 |
T |
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| Q |
216 |
gaatccaaattccttacaagccttcactataa |
247 |
Q |
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| T |
6315017 |
gaatccaaattccttacaagccttcactataa |
6315048 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 38543458 - 38543345
Alignment:
| Q |
15 |
gacatcagggttggtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataaccaaaaggatcaggaggacca |
114 |
Q |
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|||||| ||||| ||||||||||| | ||||||||||||||| |||||||| |||| |||||| | || |||||||| |||||||||||||| ||||| |
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| T |
38543458 |
gacatctgggttagtattaagaagaagatattcaacccaacccacatcaccgtttgtaccaataattttgcttccatacccaaaaggatcaggtggacct |
38543359 |
T |
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| Q |
115 |
gctctgtctttctc |
128 |
Q |
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| T |
38543358 |
gctttctctttctc |
38543345 |
T |
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