View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9301_low_27 (Length: 241)

Name: NF9301_low_27
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9301_low_27
NF9301_low_27
[»] scaffold0638 (1 HSPs)
scaffold0638 (1-226)||(5282-5505)
[»] chr2 (2 HSPs)
chr2 (163-222)||(27412489-27412548)
chr2 (24-105)||(22825693-22825767)
[»] scaffold0451 (1 HSPs)
scaffold0451 (154-222)||(8125-8193)
[»] chr7 (1 HSPs)
chr7 (23-105)||(33355238-33355313)
[»] chr1 (1 HSPs)
chr1 (22-69)||(3397536-3397583)
[»] chr8 (3 HSPs)
chr8 (23-68)||(29869924-29869969)
chr8 (76-105)||(26676827-26676856)
chr8 (145-222)||(38258697-38258773)
[»] chr3 (2 HSPs)
chr3 (23-105)||(54126588-54126663)
chr3 (71-105)||(52085490-52085524)
[»] chr5 (1 HSPs)
chr5 (71-105)||(12248588-12248622)
[»] chr4 (1 HSPs)
chr4 (36-94)||(20097725-20097783)


Alignment Details
Target: scaffold0638 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5505 - 5282
Alignment:
Q  1 ccacttttagtggttgtttgtgacaaactttgagaaaattgtggatttaaaaaatcattggcagttatatgttgtgagtattttatgtgaagaaccacat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||     
T  5505 ccacttttagtggttgtttgtgacaaactttaagaaaattgtggatttaaaaaatcattggcatttat--gttgtgagtattttatgtgaagaaccacac 5408  T
Q  101 gaaaatgcagtaagttttgtccagaaaaatattgataacaaaacatgatgaaaattaagatgaactatgtcttaccatcattatggctttaatattggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5407 gaaaatgcagtaagttttgtccagaaaaatattgataacaaaacatgatgaaaattaagatgaactatgtcttaccatcattatggctttaatattggac 5308  T
Q  201 ctttcaatacggtattcagattgttc 226  Q
    ||||||||||||||||||||||||||    
T  5307 ctttcaatacggtattcagattgttc 5282  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 27412548 - 27412489
Alignment:
Q  163 aactatgtcttaccatcattatggctttaatattggacctttcaatacggtattcagatt 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  27412548 aactatgtcttaccatcattatgcctttaatattggacctttcaatacggtaatcagatt 27412489  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 22825693 - 22825767
Alignment:
Q  24 caaactttgagaaaattgtggatttaaaaaatcattggcagttatatgttgtgagtattttatgtgaagaaccacatgaaaa 105  Q
    |||||||| |||||||| |||||||||||||||||||  |||||       |||||||||||||||||||| ||||| ||||    
T  22825693 caaactttaagaaaattatggatttaaaaaatcattgatagtta-------tgagtattttatgtgaagaatcacataaaaa 22825767  T

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Target: scaffold0451 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 8125 - 8193
Alignment:
Q  154 attaagatgaactatgtcttaccatcattatggctttaatattggacctttcaatacggtattcagatt 222  Q
    |||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8125 attaagatcaaacatgtcttaccattattatggctttaatattggacctttcaatacggtaatcagatt 8193  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 33355238 - 33355313
Alignment:
Q  23 acaaactttgagaaaattgtggatttaaaaaatcattggcagttatatgttgtgagtattttatgtgaagaaccacatgaaaa 105  Q
    ||||||||||||||| |||||||||| | |||||||||| |||||       ||||||||| |||||||||||||||||||||    
T  33355238 acaaactttgagaaatttgtggatttgagaaatcattggtagtta-------tgagtatttgatgtgaagaaccacatgaaaa 33355313  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 3397583 - 3397536
Alignment:
Q  22 gacaaactttgagaaaattgtggatttaaaaaatcattggcagttata 69  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  3397583 gacaaattttgagaaatttgtggatttaaaatatcattggcagttata 3397536  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 29869969 - 29869924
Alignment:
Q  23 acaaactttgagaaaattgtggatttaaaaaatcattggcagttat 68  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||    
T  29869969 acaaactttgagaaaattgtggatttgagaaatcattggtagttat 29869924  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 26676827 - 26676856
Alignment:
Q  76 gagtattttatgtgaagaaccacatgaaaa 105  Q
    ||||||||||||||||||||||||||||||    
T  26676827 gagtattttatgtgaagaaccacatgaaaa 26676856  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 38258773 - 38258697
Alignment:
Q  145 atgatgaaaattaagatgaactatgtcttaccatcattatggctttaatattggacctttcaatacggtattcagatt 222  Q
    |||||||||||||||||  ||||||| |||||| ||| |||||||| |||| |   ||||||||||| ||||||||||    
T  38258773 atgatgaaaattaagatcgactatgt-ttaccagcataatggctttgatatcgtttctttcaatacgatattcagatt 38258697  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 54126588 - 54126663
Alignment:
Q  23 acaaactttgagaaaattgtggatttaaaaaatcattggcagttatatgttgtgagtattttatgtgaagaaccacatgaaaa 105  Q
    ||||||||| |||||||||||||||| | |||||||||| |||||       | ||||||||||||||||||||||| |||||    
T  54126588 acaaactttaagaaaattgtggatttgagaaatcattggtagtta-------ttagtattttatgtgaagaaccacacgaaaa 54126663  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 52085524 - 52085490
Alignment:
Q  71 gttgtgagtattttatgtgaagaaccacatgaaaa 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  52085524 gttgtgagaattttatgtgaagaaccacatgaaaa 52085490  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 12248622 - 12248588
Alignment:
Q  71 gttgtgagtattttatgtgaagaaccacatgaaaa 105  Q
    |||||||||||||||||||||| ||||||||||||    
T  12248622 gttgtgagtattttatgtgaagtaccacatgaaaa 12248588  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 20097783 - 20097725
Alignment:
Q  36 aaattgtggatttaaaaaatcattggcagttatatgttgtgagtattttatgtgaagaa 94  Q
    ||||||||||||| |||||||||||| ||||||   || | ||||||||||||||||||    
T  20097783 aaattgtggatttgaaaaatcattggtagttattacttattagtattttatgtgaagaa 20097725  T

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