View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_28 (Length: 239)
Name: NF9301_low_28
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 1135916 - 1135697
Alignment:
| Q |
4 |
aaagtgagtttgataccaatgagtaaaccaaaactaaagattagggcataagtaaagaagtttagtagatggagttgagctttgaaaaaattaaaatacg |
103 |
Q |
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| T |
1135916 |
aaagtgagtgtcataccaatgagtaaaccaaaactaaagattagggcataagtaaagaagtttagtagatggagttgagctttgaaaaaattaaaatacg |
1135817 |
T |
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| Q |
104 |
atgaagctatgcttcgttgatcggtattgttctccatggtgatggtaacaacaaatcgataagaatttgtgttggtgttttcttttttactttgaagaga |
203 |
Q |
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| T |
1135816 |
atgaagctatgcttcgttgatcggtattgttctccatggtgatggtaacaacaaatcgataagaatttgtgttggtgttttcttttttactttgaagaga |
1135717 |
T |
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| Q |
204 |
aaggagagataatttgagag |
223 |
Q |
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| T |
1135716 |
aaagagagataatttgagag |
1135697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 1139124 - 1138920
Alignment:
| Q |
4 |
aaagtgagtttgataccaatgagtaaaccaaaactaaagattagggcataagtaaagaagtttagtagatggagttgagctttgaaaaaattaaaatacg |
103 |
Q |
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||||||||| ||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
1139124 |
aaagtgagtgtgataccgatgagtaaaccaaaaccaaagattagggc-taagtaaagaagtttagtagatggagttgagctttgaaaaaattaagatatg |
1139026 |
T |
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| Q |
104 |
atgaagctatgcttcgttgatcggtattgttctccatggtgatggtaacaacaaatcgataagaatttgtgttggtgttttcttttttactttgaagaga |
203 |
Q |
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| T |
1139025 |
atgaggttatgtttcgatgatcggtattgttctccatggtgatggtaattgcaaatcgataggaatttga-----tgttttcttttttactttgaagaga |
1138931 |
T |
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| Q |
204 |
aaggagagata |
214 |
Q |
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| T |
1138930 |
aaagagcgata |
1138920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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