View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_3 (Length: 629)
Name: NF9301_low_3
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 21 - 367
Target Start/End: Complemental strand, 19644688 - 19644340
Alignment:
| Q |
21 |
acacactttggtgttctaaatgcattcttcatcatcttcaatagtgttttctaacactcatcgttactattctcaatttttgtttattcatcatctatgt |
120 |
Q |
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| T |
19644688 |
acacactttggtgttctaaatgcattcttcatcatcttcaatagtgttttctaacactcatcgttactattctcaacttttgtttattcatcatctatgt |
19644589 |
T |
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| Q |
121 |
aacaagacattgaatcggttttttgtccttcattttgtt-aaggatcttt-attcattcatcattcatcgtaagactctctaattactatttcaagggac |
218 |
Q |
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| T |
19644588 |
aataagacattgaatcggttttttgtccttcattttgtttaaggttcttttattcattcgttattcatcgtaagactctctaattactatttcaagggac |
19644489 |
T |
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| Q |
219 |
ttctctattaacttcactatcattatagtttagtaacataatatatgtgtttgttcgcgcacgtgcatgcatgcggttaccatttagtttgaacatatga |
318 |
Q |
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| T |
19644488 |
ttctctattaacttcactatcattatagtttagtaacataatatatgagtttgttcgcgcacatgcatgcatgcggttaccatttagcttgaacatatga |
19644389 |
T |
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| Q |
319 |
gaacatgataatcactgttaattgtattccttatatgactacccagatg |
367 |
Q |
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| T |
19644388 |
aaacatgataatcattgttaattgtgttccttatttgactacccagatg |
19644340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 413 - 614
Target Start/End: Complemental strand, 19644090 - 19643889
Alignment:
| Q |
413 |
aatggcaaatatatataaagaagatacggaagatacaatgtacaaaggatgaaaatgattgtctaatggacaaaattagacaatgaatttgaaggaaaaa |
512 |
Q |
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| T |
19644090 |
aatggcaaatatatataaagaagatacggaagatacaatgtacaaaggatgaaaatgattgtctaatggacaaaattagacaatgaatttgaaggaaaaa |
19643991 |
T |
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| Q |
513 |
tgataatatgaaaggttagcaacaatgaacaaacagtaaatagatatatttgttatggcctttgcaagaatagtaaacaaacccgttgatttagcactta |
612 |
Q |
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| T |
19643990 |
taataatatgaaaggttagcaacaatgaacaaacagtaaatagatatatttgttatggcctttgcaagaatagtaaacaaacccgttgatttagcactta |
19643891 |
T |
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| Q |
613 |
tt |
614 |
Q |
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|| |
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| T |
19643890 |
tt |
19643889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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