View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_32 (Length: 228)
Name: NF9301_low_32
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_32 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 6629525 - 6629595
Alignment:
| Q |
158 |
ctgtgggagtagaaaattgaagaaattcgtttaaaaaccatcttcaattccttttctcttaagactttcgt |
228 |
Q |
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| T |
6629525 |
ctgtgggagtagaaaattgaagaaattcgtttaaaaaccatcttcaattccttttctcttaagactttcgt |
6629595 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 6629370 - 6629430
Alignment:
| Q |
2 |
ggatatagacgggcacgaattcccgtctcaatgctaattaatgtacattattaccaaaatg |
62 |
Q |
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| T |
6629370 |
ggatatagacgggcacgaattcccgtctcaatgctaattaatgtacattattaccaaaatg |
6629430 |
T |
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