View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_35 (Length: 215)
Name: NF9301_low_35
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 8571958 - 8571772
Alignment:
| Q |
12 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
111 |
Q |
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| T |
8571958 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtaaaagatcaaat |
8571859 |
T |
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| Q |
112 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaat |
198 |
Q |
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| T |
8571858 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaat |
8571772 |
T |
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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 53754570 - 53754384
Alignment:
| Q |
12 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
111 |
Q |
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| T |
53754570 |
agcagagaaggaactcattcgaagatggtgtttcgggaacaacatgccccatcccaccagggaggaacttcacatatattcttcaagtgaaggatcaaat |
53754471 |
T |
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| Q |
112 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaat |
198 |
Q |
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| T |
53754470 |
tggaagcttttactactttccatctctagcatttcaaaaagcagctggtggttttggaggcattaggatactcagtagacctagaat |
53754384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 28940921 - 28940785
Alignment:
| Q |
33 |
aagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtttctattatttccc |
132 |
Q |
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|||||||||| | ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||| |||||||||||||| || |||| ||||| || |
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| T |
28940921 |
aagatggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttcc |
28940822 |
T |
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| Q |
133 |
atctcttgcattccacaaagctgctggtggttttgga |
169 |
Q |
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| T |
28940821 |
atctcttgcttttcacaaggcagctggtggttttgga |
28940785 |
T |
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