View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9301_low_4 (Length: 521)
Name: NF9301_low_4
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 44956346 - 44955851
Alignment:
| Q |
12 |
agtttggcataaaaggtgcgtaccttgttgaagttccaaattttgagaacagttgttttgtcaaatagaggatttttgaaaagacaatctgtagtaggaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
44956346 |
agtttggcataaaaggtgcgtaccttgttgaagttccaaattttgagaacaattgttttgtcaaatagaggatatttgaaaagacagtctgtagtaggaa |
44956247 |
T |
|
| Q |
112 |
gaggaaaatgtatgcattttgggattgtaccatcagggaacacaagtttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaattgg |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
44956246 |
gaggaaaatgtatgcattttggaattgtaccatcagggaacacgagtttcttaatcagatcaaagtcatgaaagccaacatcatcactcaaataaattgg |
44956147 |
T |
|
| Q |
212 |
accaccacaaatagctcttgagccagcatgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44956146 |
accaccacaaatagctcttgagccagcatgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataag |
44956047 |
T |
|
| Q |
312 |
ctattataggaacaatgaatcatgtgaacaccttgtaaccaaaaagctcccattggatcaccattaggatcttggaaccaaaagtcgtcccctgcacaca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44956046 |
ctattataggaacaatgaatcatgtgaacacattgtaaccaaaaagctcccattggatcaccattaggatcttggaaccaaaagtcgtcccttgcacaca |
44955947 |
T |
|
| Q |
412 |
aaaatcacaactttttgaacaccatttacatatgtatgtatgaatgaataaataacaacaaaattcattgatcatgtgcttgtatattgcttattg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44955946 |
aaaatcacaactttttgaacaccatttacatatgtatgtatgaatgaaaaaataacaacaaaattcattgatcatgtgcttgtatattgcttattg |
44955851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 32 - 416
Target Start/End: Original strand, 43562728 - 43563112
Alignment:
| Q |
32 |
taccttgttgaagttccaaattttgagaacagttgttttgtcaaatagaggatttttgaaaagacaatctgtagtaggaagaggaaaatgtatgcatttt |
131 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
43562728 |
taccttgttgaaattccaaattttgagaacagttgttttgtcaaatagagaatttttgaaaagacaatctctagtaggaagaggaaaatgtatgcatttg |
43562827 |
T |
|
| Q |
132 |
gggattgtaccatcagggaacacaagtttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaattggaccaccacaaatagctcttg |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43562828 |
gggattgtaccatcaggtaacacaagtttcttaatcaaatcaaagtcatgagagccaacactatcactcaaataaattggaccaccacaaatagctcttg |
43562927 |
T |
|
| Q |
232 |
agccagcatgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattataggaacaatgaat |
331 |
Q |
| |
|
| |||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
43562928 |
aaccagcatgaaatttagcacaaacatggttagattggaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattgtaggaacaatgaat |
43563027 |
T |
|
| Q |
332 |
catgtgaacaccttgtaaccaaaaagctcccattggatcaccattaggatcttggaaccaaaagtcgtcccctgcacacaaaaat |
416 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
43563028 |
catgtgtacaccttgtaaccagaaagctcccattggatcaccattaggatcttggaaccaaaagtcgtcccctacacataaaaat |
43563112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 336
Target Start/End: Complemental strand, 26171804 - 26171613
Alignment:
| Q |
139 |
taccatcagggaacacaagtttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaattggaccaccacaaatagctcttgagccagc |
238 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| || || |
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|
| T |
26171804 |
taccatcagggaaaacaagcttcttaatcagatcaaaggcatgagagccaacattatcattcaaataaactggaccaccacagatagctcttgaacctgc |
26171705 |
T |
|
| Q |
239 |
atgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattataggaacaatgaatcatgt |
336 |
Q |
| |
|
||||||||| ||||||||||| | |||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26171704 |
atgaaatttggcacaaatatgtt---actggaacatgtcccaatcaggttgaatcaattgtcccatccataagctatt---cgaacaatgaatcatgt |
26171613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 43563148 - 43563214
Alignment:
| Q |
440 |
catatgtatgtatgaatgaataa--ataacaacaaaattcattgatcatgtgcttgtatattgctta |
504 |
Q |
| |
|
||||||||||||||||||||||| | || | ||||||||||||||| |||||| ||||||||||| |
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|
| T |
43563148 |
catatgtatgtatgaatgaataaagaaaatatcaaaattcattgatcccgtgcttatatattgctta |
43563214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 31 - 404
Target Start/End: Original strand, 36430575 - 36430948
Alignment:
| Q |
31 |
gtaccttgttgaagttccaaattttgagaacagttgttttgtcaaatagaggatttttgaaaagacaatctgtagtaggaagaggaaaatgtatgcattt |
130 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||| |||||||||||| || |||||||| |||||| | || ||||| |||||||||||||| || |
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|
| T |
36430575 |
gtaccttgttgaagttccagattttgaggacagaggtttggtcaaatagagggttcttgaaaaggcaatctcttgttggaaggggaaaatgtatgcactt |
36430674 |
T |
|
| Q |
131 |
tgggattgtaccatcagggaacacaagtttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaattggaccaccacaaatagctctt |
230 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
36430675 |
aggaattgtaccatcagggaaaacaagcttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaactggaccaccacagatagctctt |
36430774 |
T |
|
| Q |
231 |
gagccagcatgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattataggaacaatgaa |
330 |
Q |
| |
|
|| || ||||||||||| |||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
36430775 |
gaacctgcatgaaatttggcacaaatatggtctgattggaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaa |
36430874 |
T |
|
| Q |
331 |
tcatgtgaacaccttgtaaccaaaaagctcccattggatcaccattaggatcttggaaccaaaagtcgtcccct |
404 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36430875 |
tcatgtgtacaccttgtaaccaaaaaactcccattgaatcaccattaggatcttggaaccaaaagtcatcccct |
36430948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 31 - 404
Target Start/End: Complemental strand, 43976268 - 43975895
Alignment:
| Q |
31 |
gtaccttgttgaagttccaaattttgagaacagttgttttgtcaaatagaggatttttgaaaagacaatctgtagtaggaagaggaaaatgtatgcattt |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||| ||||||| ||||||| ||||| | |
|
|
| T |
43976268 |
gtaccttgttgaagttccaaattttgagaacagttttttgatcaaatagagggtttttgaaaagacaatctctagttggaagagcaaaatgtgtgcatct |
43976169 |
T |
|
| Q |
131 |
tgggattgtaccatcagggaacacaagtttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaattggaccaccacaaatagctctt |
230 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43976168 |
ggggattgtaccatcagggaacacaagcttcttaatcaaatcaaagtcatgagagccaacattatcactcaaataaattggaccaccacaaatagctctt |
43976069 |
T |
|
| Q |
231 |
gagccagcatgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattataggaacaatgaa |
330 |
Q |
| |
|
|| || |||||| |||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43976068 |
gaacctgcatgatatttggcacaaatatggtctgattgaaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaa |
43975969 |
T |
|
| Q |
331 |
tcatgtgaacaccttgtaaccaaaaagctcccattggatcaccattaggatcttggaaccaaaagtcgtcccct |
404 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| | | |||| | | || ||||||||| |||||| |
|
|
| T |
43975968 |
tcatgtgtagcccttgtaaccaaaaagctcccattggatcatcttcaggaccattgacccaaaagtcatcccct |
43975895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 16224909 - 16225082
Alignment:
| Q |
139 |
taccatcagggaacacaagtttcttaatcagatcaaagtcatgagagccaacattatcactcaaataaattggaccaccacaaatagctcttgagccagc |
238 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || || |
|
|
| T |
16224909 |
taccatcagggaaaaca-gcttcttaatcagattaaaggcatgagagccaacattatcactcaaataaactggaccaccacagatagctcttgaacctgc |
16225007 |
T |
|
| Q |
239 |
atgaaatttagcacaaatatggtccgactgaaacatgtcccaatcaggtcgaatcatttgtcccatccataagctatt |
316 |
Q |
| |
|
||||||||| |||||||||||||| | || |||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
16225008 |
atgaaatttggcacaaatatggtcttattggaacatgtcccaatcaggttga---atttgtcctatccataagctatt |
16225082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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