View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_6 (Length: 480)
Name: NF9301_low_6
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 25469141 - 25468691
Alignment:
| Q |
17 |
aaatttggattgaggattttagaaggtgctgtaagtctatattacagtaaatatttgagattttttaaaaagtgaaagaataagacaataaataaattta |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25469141 |
aaatttggattgaggattttagaaggtgttgtaagtctatactacagtaaatatttgagattttttaaaaagtgaaagaataagacaataaataaattta |
25469042 |
T |
|
| Q |
117 |
taacatttcaaatatcaatcaccacttaattatgctgaaaagcatttaataacnnnnnnnaatgtagaaaagaaaaataagttatctcatgctctccaaa |
216 |
Q |
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| T |
25469041 |
taacatttcaaatttcaatcaccacttaattatgctgaaaagcatttaataacttattttaatgtagaaaagaaaaataagttatctcatgctctccaaa |
25468942 |
T |
|
| Q |
217 |
atcctacatttaaacatnnnnnnncactaactagtacttagacatcaaaatgtcgatgtccaaactccaaatgatattatcaacattcattggtacatca |
316 |
Q |
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|||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25468941 |
atcctaaatttaa-cataaaaaaacactaacaagtacttagacatcaaaatgtcgatgtccaaactccaaatgatattatcaacattcattggtacatca |
25468843 |
T |
|
| Q |
317 |
caattaatttggttaaccacttccaatcttatgcagttggatctatgccttaatgtttatgtcctgtcataagaatcataaaagcacataaaatgtgcaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25468842 |
caattaatttggttaaccacttccaatcttatgcagttggatctatgccttaatgtttatgtcctgtcataagaatcataaaagcacataaaatgtgcaa |
25468743 |
T |
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| Q |
417 |
aggtagtgacaattggtaggtctgtagtccccaccataaactgtgatgtgat |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25468742 |
aggtagtgacaattggtaggtctgtagtccccaccataaactgtgatgtgat |
25468691 |
T |
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