View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_8 (Length: 467)
Name: NF9301_low_8
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 53499346 - 53498911
Alignment:
| Q |
18 |
agaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtac |
117 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499346 |
agaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtac |
53499247 |
T |
|
| Q |
118 |
gattgcatttatgttttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatc |
217 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499246 |
gattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatc |
53499147 |
T |
|
| Q |
218 |
aactcaagtcattgtgattccagtgccttacaaagatgttaatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagcaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499146 |
aactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagcaaaa |
53499047 |
T |
|
| Q |
318 |
atacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499046 |
atacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaa |
53498947 |
T |
|
| Q |
418 |
tggatttagaaaataaacaggttatctatgatgtcc |
453 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
53498946 |
tggatttagaaaataaacaggttatctatgttgtcc |
53498911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 53491753 - 53491318
Alignment:
| Q |
18 |
agaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtac |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| |
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|
| T |
53491753 |
agaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtac |
53491654 |
T |
|
| Q |
118 |
gattgcatttatgttttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatc |
217 |
Q |
| |
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|||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
53491653 |
gattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatc |
53491554 |
T |
|
| Q |
218 |
aactcaagtcattgtgattccagtgccttacaaagatgttaatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
53491553 |
aactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaa |
53491454 |
T |
|
| Q |
317 |
aatacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggcca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
53491453 |
aatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggcca |
53491354 |
T |
|
| Q |
417 |
atggatttagaaaataaacaggttatctatgatgtc |
452 |
Q |
| |
|
| |||||||| |||||| ||||||||||||| |||| |
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|
| T |
53491353 |
aaggatttagtaaataagcaggttatctatgttgtc |
53491318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 147 - 442
Target Start/End: Complemental strand, 16070303 - 16070008
Alignment:
| Q |
147 |
taacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
246 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
247 |
acaaagatgttaatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagcaaaaatacgtgctgagttagattctagagatag |
346 |
Q |
| |
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||||| | ||| || | |||||||| ||||| ||||||||||| | ||||| ||| || |||||| |||||| ||||| ||||||||||||||||||| |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaagaaaaaattcgtgccgagttagattctagagataa |
16070104 |
T |
|
| Q |
347 |
ctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttat |
442 |
Q |
| |
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||| |||| ||||| |||||||||||||||||||||||||| |||||| ||| | |||||||| ||| || || ||||| |||||| |||||||| |
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|
| T |
16070103 |
ctattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttat |
16070008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 16070454 - 16070390
Alignment:
| Q |
18 |
agaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtcta |
82 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||| |
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|
| T |
16070454 |
agaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
368 |
ttctgaatgggaaatgaaaggcgtccctctaaggattga |
406 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 139 - 439
Target Start/End: Original strand, 45355140 - 45355440
Alignment:
| Q |
139 |
cgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattcc |
238 |
Q |
| |
|
||||| || |||||||||| | ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| |
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|
| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
|
| Q |
239 |
agtgccttacaaagatgttaatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagcaaaaatacgtgctgagttagattct |
338 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||| | |||| ||||||||||||||| ||| |||||| ||| |||||||||| |||| | |
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|
| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagcaggaattcgtgctgagtcagatgcc |
45355339 |
T |
|
| Q |
339 |
agagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacagg |
438 |
Q |
| |
|
||||| | ||| ||||||| | ||| |||||| | |||||||||||||| || ||||||||||||||||| |||| | |||||||| |||||| |||| |
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|
| T |
45355340 |
agagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcagg |
45355439 |
T |
|
| Q |
439 |
t |
439 |
Q |
| |
|
| |
|
|
| T |
45355440 |
t |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 45355021 - 45355076
Alignment:
| Q |
18 |
agaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttt |
73 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||| |
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|
| T |
45355021 |
agaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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